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haguettaz / rusty-snn

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3 simulation #11

Closed haguettaz closed 1 week ago

haguettaz commented 2 weeks ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 weeks ago

[!CAUTION]

Review failed

The pull request is closed.

Walkthrough

The pull request introduces significant changes across multiple files in the rusty_snn package. Key updates include modifications to the Cargo.toml dependencies, enhancements to neuron and connection structures in JSON files, and the introduction of new modules for core functionalities like spike_train, network, neuron, and connection. Additionally, a new simulation framework is established with modules for managing simulation intervals and programs. Several existing files are deleted, indicating a restructuring of the codebase to streamline functionality and improve organization.

Changes

File Change Summary
Cargo.toml Updated dependencies: serde, rand_distr, derivative, tempfile, and added tokio.
network.json Added inputs property to neurons; removed firing_times from connections.
src/core.rs Added modules: spike_train, network, neuron, connection; defined constants REFRACTORY_PERIOD and FIRING_THRESHOLD.
src/core/connection.rs Introduced Connection struct with methods for creation and error handling.
src/core/network.rs Implemented Network struct for managing neurons and connections, with methods for simulation.
src/core/neuron.rs Defined Input and Neuron structs with methods for handling neuron behavior and firing times.
src/core/spike_train.rs Added SpikeTrain struct with error handling for refractory period violations.
src/lib.rs Updated documentation and reorganized module exports.
src/main.rs Enhanced main function with random network sampling and simulation capabilities.
src/network.rs Modified module exports, removing connection and adding spike_train.
src/network/_kernel.rs Deleted file containing Kernel struct and related methods.
src/network/_tmp.rs Deleted file for managing neuron communication channels.
src/network/connection.rs Deleted file with Connection struct and associated methods.
src/network/error.rs Deleted file defining NetworkError enum.
src/network/network.rs Deleted file implementing Network struct and its methods.
src/network/neuron.rs Deleted file for Neuron struct and its functionalities.
src/optimizer.rs Introduced new optimizer module.
src/sampler.rs Added network and spike_train modules.
src/sampler/network.rs Updated NetworkSampler struct with refined error handling and sampling methods.
src/sampler/spike_train.rs Refactored documentation for PeriodicSpikeTrainSampler.
src/simulator.rs Introduced simulator and comparator modules, with constants for simulation parameters.
src/simulator/comparator.rs Updated error handling in Comparator struct and renamed error types.
src/simulator/simulator.rs Added SimulationInterval and SimulationProgram structs with error handling.
src/spike_train.rs Deleted file exporting comparator, sampler, and error modules.
src/spike_train/error.rs Deleted SpikeTrainError enum.
src/utils.rs Removed module declaration for types.

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