Describe the bug
Version: 4.2.1, built at Aug 23 2019
Sat May 6 22:21:06 2023-----------------------------------------------------------
Family information: cafe23.data
Log: reports/log2.txt
The number of families is 24854
Root Family size : 1 ~ 301
Family size : 0 ~ 291
P-value: 0.05
Num of Threads: 8
Num of Random: 1000
cafe: tree(((((Ola_all_protein:287.529154,Oni_all_protein:287.529154):44.351314,Gac_all_protein:331.880468)0.892:35.980534,Tru_all_protein:367.861002):299.256678,((((((((Sas_all_protein:17.496540,Sla_all_protein:17.496540):5.481296,Sme_all_protein:22.977836):6.106593,Sgl_all_protein:29.084429):139.670798,(((Hwy_all_protein:64.412866,Hma_all_protein:64.412866):44.320043,(Tfu_all_protein:34.943287,Llo_all_protein:34.943287):73.789622):48.643572,(((Ifu_newpro:21.605407,Ipu_all_protein:21.605407):26.394593,Amel_all_protein:48.000000):92.691220,((Phy_all_protein:35.020945,Pgi_newpro:35.020945):20.539795,Pdj_newpro:55.560741):85.130479):16.685261):11.378746):14.275970,Cgar_newpro:183.031197):175.426083,Eel_all_protein:358.457279):28.550506,Amex_all_protein:387.007785):109.008719,Dre_all_protein:496.016504):171.101176):229.431847,Loc_all_protein:896.549527): command not found
this is my script
!cafe
version
date
load -i cafe23.data -t 8 -l reports/log2.txt -p 0.05
tree(((((Ola_all_protein:287.529154,Oni_all_protein:287.529154):44.351314,Gac_all_protein:331.880468)0.892:35.980534,Tru_all_protein:367.861002):299.256678,((((((((Sas_all_protein:17.496540,Sla_all_protein:17.496540):5.481296,Sme_all_protein:22.977836):6.106593,Sgl_all_protein:29.084429):139.670798,(((Hwy_all_protein:64.412866,Hma_all_protein:64.412866):44.320043,(Tfu_all_protein:34.943287,Llo_all_protein:34.943287):73.789622):48.643572,(((Ifu_newpro:21.605407,Ipu_all_protein:21.605407):26.394593,Amel_all_protein:48.000000):92.691220,((Phy_all_protein:35.020945,Pgi_newpro:35.020945):20.539795,Pdj_newpro:55.560741):85.130479):16.685261):11.378746):14.275970,Cgar_newpro:183.031197):175.426083,Eel_all_protein:358.457279):28.550506,Amex_all_protein:387.007785):109.008719,Dre_all_protein:496.016504):171.101176):229.431847,Loc_all_protein:896.549527)
lambda -s -t (((((1,1)1,1)1,1)1,(((((((1,1)1,1)1,(((1,1)1,((1,1)1,1)1)1,((1,1)1,1)1)1)1,1)1,1)1,1)1,1)1)1,1)
report reports/report_run1
When I run my script, I never get my result file, and its error is always the one shown above; How do I get the result file about the **.cafe
Thank you very much!!
benfulton
commented
1 year ago
Describe the bug Version: 4.2.1, built at Aug 23 2019 Sat May 6 22:21:06 2023----------------------------------------------------------- Family information: cafe23.data Log: reports/log2.txt The number of families is 24854 Root Family size : 1 ~ 301 Family size : 0 ~ 291 P-value: 0.05 Num of Threads: 8 Num of Random: 1000 cafe: tree(((((Ola_all_protein:287.529154,Oni_all_protein:287.529154):44.351314,Gac_all_protein:331.880468)0.892:35.980534,Tru_all_protein:367.861002):299.256678,((((((((Sas_all_protein:17.496540,Sla_all_protein:17.496540):5.481296,Sme_all_protein:22.977836):6.106593,Sgl_all_protein:29.084429):139.670798,(((Hwy_all_protein:64.412866,Hma_all_protein:64.412866):44.320043,(Tfu_all_protein:34.943287,Llo_all_protein:34.943287):73.789622):48.643572,(((Ifu_newpro:21.605407,Ipu_all_protein:21.605407):26.394593,Amel_all_protein:48.000000):92.691220,((Phy_all_protein:35.020945,Pgi_newpro:35.020945):20.539795,Pdj_newpro:55.560741):85.130479):16.685261):11.378746):14.275970,Cgar_newpro:183.031197):175.426083,Eel_all_protein:358.457279):28.550506,Amex_all_protein:387.007785):109.008719,Dre_all_protein:496.016504):171.101176):229.431847,Loc_all_protein:896.549527): command not found
this is my script
!cafe
version date load -i cafe23.data -t 8 -l reports/log2.txt -p 0.05 tree(((((Ola_all_protein:287.529154,Oni_all_protein:287.529154):44.351314,Gac_all_protein:331.880468)0.892:35.980534,Tru_all_protein:367.861002):299.256678,((((((((Sas_all_protein:17.496540,Sla_all_protein:17.496540):5.481296,Sme_all_protein:22.977836):6.106593,Sgl_all_protein:29.084429):139.670798,(((Hwy_all_protein:64.412866,Hma_all_protein:64.412866):44.320043,(Tfu_all_protein:34.943287,Llo_all_protein:34.943287):73.789622):48.643572,(((Ifu_newpro:21.605407,Ipu_all_protein:21.605407):26.394593,Amel_all_protein:48.000000):92.691220,((Phy_all_protein:35.020945,Pgi_newpro:35.020945):20.539795,Pdj_newpro:55.560741):85.130479):16.685261):11.378746):14.275970,Cgar_newpro:183.031197):175.426083,Eel_all_protein:358.457279):28.550506,Amex_all_protein:387.007785):109.008719,Dre_all_protein:496.016504):171.101176):229.431847,Loc_all_protein:896.549527) lambda -s -t (((((1,1)1,1)1,1)1,(((((((1,1)1,1)1,(((1,1)1,((1,1)1,1)1)1,((1,1)1,1)1)1)1,1)1,1)1,1)1,1)1)1,1) report reports/report_run1
When I run my script, I never get my result file, and its error is always the one shown above; How do I get the result file about the **.cafe Thank you very much!!