Closed Paul-Donat closed 7 months ago
My input file for gene families contained 6,138 gene families. When I look at the Gamma_family_results.txt file it only lists results for 5,873 gene families. Below is the command I used to run cafe.
cafe5 --infile c1_c2.filt100.tsv --tree c1_c2.tree --cores 40 --n_gamma_cats 15 -p -o results_15
Why were genes omitted? Any help would be appreciated. Thank you.
My input file for gene families contained 6,138 gene families. When I look at the Gamma_family_results.txt file it only lists results for 5,873 gene families. Below is the command I used to run cafe.
cafe5 --infile c1_c2.filt100.tsv --tree c1_c2.tree --cores 40 --n_gamma_cats 15 -p -o results_15Why were genes omitted? Any help would be appreciated. Thank you.