Installation can't find shared libraries after `make install`

[jtourig]

Once dependencies satisfied with conda environment, I got CMake warnings during build:

CMake Warning at CMakeLists.txt:30 (add_executable):
  Cannot generate a safe runtime search path for target tests because files
  in some directories may conflict with libraries in implicit directories:

    runtime library [libgomp.so.1] in /N/soft/rhel7/gcc/6.3.0/lib64 may be hidden by files in:
      /N/u/tourigny/Carbonate/.conda/envs/cagee/lib

  Some of these libraries may not be found correctly.

CMake Warning at CMakeLists.txt:29 (add_executable):
  Cannot generate a safe runtime search path for target cagee because files
  in some directories may conflict with libraries in implicit directories:

    runtime library [libgomp.so.1] in /N/soft/rhel7/gcc/6.3.0/lib64 may be hidden by files in:
      /N/u/tourigny/Carbonate/.conda/envs/cagee/lib

  Some of these libraries may not be found correctly.

Build proceeds normally thereafter with make; I am able to run the cagee binary from the build dir

• however, after make install (I specified cmake -DCMAKE_INSTALL_PREFIX="${HOME}/usr/local/" .. for a HOME dir installation on the cluster), cagee can't find its shared libs from the install dir (~/usr/local/bin/):

  [tourigny@i27 bin]$ ./cagee
  ./cagee: error while loading shared libraries: libboost_program_options.so.1.77.0: cannot open shared object file: No such file or directory

• does this have something to do with the CMake warnings, or the conda env?

However, when I manually copy it over, cp ~/usr/local/src/CAGEE/build/cagee ~/usr/local/bin/cagee, it works fine though...

So why does it work in the build dir, and when I cp it to its install dir, but make install loses track of its dependencies?

[benfulton]

Yes, I think it's due to the libgomp conflict. Does it work if you just remove that from /N/u/tourigny/Carbonate/.conda/envs/cagee/lib ?

[benfulton]

Eigen 3.4 is on Carbonate now, so you should just be able to run

$ module load eigen boost cmake