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haibol2016 / ArchR_utilities

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bug in get_geneID_symbol() #4

Closed hukai916 closed 2 years ago

hukai916 commented 2 years ago

In line 110, 

id_symbol <- data.frame(gene_id = gene_id, symbol = gene_id)

should be

id_symbol <- data.frame(gene_id = unlist(id2symbol_dict$keys()), symbol = unlist(id2symbol_dict$values()))
haibol2016 commented 2 years ago

@hukai916 , I have gene_id = unlist(id2symbol_dict$keys()) a few lines above. So I prefer id_symbol <- data.frame(gene_id = gene_ids, symbol = gene_ids)

Sorry I had a typo before. gene_id should be "gene_ids"