I can add more if necessary, I intend to fix this soon and don't want to forget. While adding GT to reference data, we try to set it such that the fields for the genotype are consistent across reference and variant data. split_multi currently only splits the variant data, but splitting drops LGT so if LGT is present in reference data, then we should make it GT.
I can add more if necessary, I intend to fix this soon and don't want to forget. While adding
GTto reference data, we try to set it such that the fields for the genotype are consistent across reference and variant data.split_multicurrently only splits the variant data, but splitting dropsLGTso ifLGTis present in reference data, then we should make itGT.