set `persist` as option via argument

[Mikejmnez]

This closes issue #315 . Whether the transformation is persisted or not, is controlled via a True or False (it is False by default) argument that is passed to llc_rearrange.py via oceanspy.subsample.cutout. This is

cut_od = od.subsample.cutout(XRange, YRange)

performs a cutout defined by XRange and YRange, where the transformation is NOT persisted.

To persist the transformation before the cutout:

cut_od = od.subsample.cutout(XRange, YRange, persist=True)

[codecov[bot]]

Codecov Report

Merging #319 (df7b711) into main (df54edf) will decrease coverage by 0.25%. The diff coverage is 37.50%.

@@            Coverage Diff             @@
##             main     #319      +/-   ##
==========================================
- Coverage   95.74%   95.50%   -0.25%     
==========================================
  Files           9        9              
  Lines        3928     3936       +8     
  Branches      850      854       +4     
==========================================
- Hits         3761     3759       -2     
- Misses         97      102       +5     
- Partials       70       75       +5     

Flag	Coverage Δ
unittests	95.50% <37.50%> (-0.25%)	:arrow_down:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
oceanspy/_oceandataset.py	97.12% <ø> (ø)
oceanspy/animate.py	98.01% <ø> (ø)
oceanspy/compute.py	98.81% <ø> (ø)
oceanspy/plot.py	97.52% <ø> (ø)
oceanspy/subsample.py	98.04% <ø> (ø)
oceanspy/llc_rearrange.py	87.30% <37.50%> (-1.30%)	:arrow_down:

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[Mikejmnez]

This is the error being described by pre-commit.ci

This is defined within the pre-commit-config.yaml file:

- repo: https://github.com/nbQA-dev/nbQA
  rev: 1.6.1
  hooks:
  - id: nbqa-black
    additional_dependencies: [black]
    args: [--nbqa-mutate]
  - id: nbqa-isort
    additional_dependencies: [isort]
    args: [--nbqa-mutate]

When running pre-commit run --all on my local fork, everything runs fine. I have version 3.0.2 of pre-commit

[ThomasHaine]

What's the version of the automated pre-commit.ci? Can the failure be corrected by updating to 3.0.2?

Also, can you share a notebook that demos both versions of persist={True,False}. I want to experiment.

[Mikejmnez]

Got it. I had to do a series of updates on pre-commit so it would show the same errors on my local computer/workstation as in here (snapshot above). It finally did and was able to fix those two files.

I did:

pre-commit autoupdate --bleeding-edge --repo https://github.com/pre-commit/pre-commit-hooks
pre-commit clean

and finally

pre-commit run --all