search

hainegroup / oceanspy

A Python package to facilitate ocean model data analysis and visualization.
https://oceanspy.readthedocs.io
MIT License
101 stars 32 forks source link

can't build the binder #352

Closed Mikejmnez closed 1 year ago

Mikejmnez commented 1 year ago

Latest

After the last couple of PRs were merged, I have tried many times and have been unsuccessful in building/running the binder.

Depending on how I try ( a) right click onto binder link, or b) clicking on the url) I get two different errors.

a) 500: Internal Server Error, or b) Too many users on this Binderhub! Try again soon. With additional raw logs.

Here is the log for the latest try (option b)

Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2docker1u7jmiuh'...
HEAD is now at 20c1a5d implement trusted publishing (#350)
Python version unspecified, using current default Python version 3.10. This will change in the future.Building conda environment for python=3.10
Using CondaBuildPack builder
Step 1/52 : FROM buildpack-deps:bionic
 ---> bf89ebf6b3e4
Step 2/52 : ENV DEBIAN_FRONTEND=noninteractive
 ---> Using cache
 ---> 13a8ca37d9a0
Step 3/52 : RUN apt-get -qq update &&     apt-get -qq install --yes --no-install-recommends locales > /dev/null &&     apt-get -qq purge &&     apt-get -qq clean &&     rm -rf /var/lib/apt/lists/*
 ---> Using cache
 ---> be28a332d79b
Step 4/52 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen &&     locale-gen
 ---> Using cache
 ---> 5b24f363e699
Step 5/52 : ENV LC_ALL=en_US.UTF-8     LANG=en_US.UTF-8     LANGUAGE=en_US.UTF-8
 ---> Using cache
 ---> b4b606726271
Step 6/52 : ENV SHELL=/bin/bash
 ---> Using cache
 ---> 1c4716441e43
Step 7/52 : ARG NB_USER
 ---> Using cache
 ---> 1ea8d9477f59
Step 8/52 : ARG NB_UID
 ---> Using cache
 ---> 5cdebf32d7d1
Step 9/52 : ENV USER=${NB_USER}     HOME=/home/${NB_USER}
 ---> Using cache
 ---> 1d78f766c8f5
Step 10/52 : RUN groupadd         --gid ${NB_UID}         ${NB_USER} &&     useradd         --comment "Default user"         --create-home         --gid ${NB_UID}         --no-log-init         --shell /bin/bash         --uid ${NB_UID}         ${NB_USER}
 ---> Using cache
 ---> 31a5b65bfb63
Step 11/52 : RUN apt-get -qq update &&     apt-get -qq install --yes --no-install-recommends        less        unzip        > /dev/null &&     apt-get -qq purge &&     apt-get -qq clean &&     rm -rf /var/lib/apt/lists/*
 ---> Using cache
 ---> 26a253156556
Step 12/52 : EXPOSE 8888
 ---> Using cache
 ---> cc532766a670
Step 13/52 : ENV APP_BASE=/srv
 ---> Using cache
 ---> ea186611018d
Step 14/52 : ENV CONDA_DIR=${APP_BASE}/conda
 ---> Using cache
 ---> 91acf6c11999
Step 15/52 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
 ---> Using cache
 ---> 53274db92f30
Step 16/52 : ENV NPM_DIR=${APP_BASE}/npm
 ---> Using cache
 ---> a23c1f4c945f
Step 17/52 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
 ---> Using cache
 ---> 562353b170f9
Step 18/52 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
 ---> Using cache
 ---> ff923963d2ad
Step 19/52 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
 ---> Using cache
 ---> 9c4caf98c876
Step 20/52 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
 ---> Using cache
 ---> b2d44bee034f
Step 21/52 : ENV CONDA_PLATFORM=linux-64
 ---> Using cache
 ---> 4373053f8a63
Step 22/52 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX}
 ---> Using cache
 ---> a3a8ae6b076f
Step 23/52 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
 ---> Using cache
 ---> 791f0d4aed35
Step 24/52 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
 ---> Using cache
 ---> 64a554e27344
Step 25/52 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e10-2dlinux-2d64-2elock-388e0b /tmp/env/environment.lock
 ---> Using cache
 ---> 470124ba6e83
Step 26/52 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
 ---> Using cache
 ---> 118ab159d5ee
Step 27/52 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
 ---> Using cache
 ---> ff35c129bdc3
Step 28/52 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
 ---> Using cache
 ---> b0a5cb6bb79a
Step 29/52 : USER root
 ---> Using cache
 ---> d70774db727c
Step 30/52 : ARG REPO_DIR=${HOME}
 ---> Using cache
 ---> 0e4aec8a509c
Step 31/52 : ENV REPO_DIR=${REPO_DIR}
 ---> Using cache
 ---> e76a68cf0c02
Step 32/52 : RUN if [ ! -d "${REPO_DIR}" ]; then         /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}";     fi
 ---> Using cache
 ---> 9c605078801f
Step 33/52 : WORKDIR ${REPO_DIR}
 ---> Using cache
 ---> 3f751ddeeeae
Step 34/52 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
 ---> Using cache
 ---> 6c93457d687e
Step 35/52 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
 ---> Using cache
 ---> c0832c6bc1e0
Step 36/52 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
 ---> Using cache
 ---> 99bd25915edc
Step 37/52 : COPY --chown=1000:1000 src/binder/environment.yml ${REPO_DIR}/binder/environment.yml
 ---> Using cache
 ---> 0dc4dc05222d
Step 38/52 : USER ${NB_USER}
 ---> Using cache
 ---> bb9508089ee5
Step 39/52 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
 ---> Running in 0ed2c338b52e

Looking for: ['python', 'numpy', "matplotlib[version='<3.5.3']", 'pandas', 'bokeh', 'rise', 'dask', 'distributed', 'bottleneck', 'netcdf4', 'xarray', 'cartopy', 'esmpy', 'intake-xarray', 'geopy', "xesmf[version='>0.6.3']", 'esmf', 'xgcm', 'ipython', 'xmitgcm', 'ffmpeg', 'tqdm', 'pip']

Transaction

  Prefix: /srv/conda/envs/notebook

  Updating specs:

   - numpy
   - matplotlib[version='<3.5.3']
   - pandas
   - bokeh
   - rise
   - dask
   - distributed
   - bottleneck
   - netcdf4
   - xarray
   - cartopy
   - esmpy
   - intake-xarray
   - geopy
   - xesmf[version='>0.6.3']
   - esmf
   - xgcm
   - xmitgcm
   - ffmpeg
   - tqdm
   - python
   - ipython
   - pip

  Package                           Version  Build                    Channel                   Size
──────────────────────────────────────────────────────────────────────────────────────────────────────
  Install:
──────────────────────────────────────────────────────────────────────────────────────────────────────

  + alsa-lib                          1.2.8  h166bdaf_0               conda-forge/linux-64     592kB
  + aom                               3.5.0  h27087fc_0               conda-forge/linux-64       3MB
  + appdirs                           1.4.4  pyh9f0ad1d_0             conda-forge/noarch        13kB
  + arrow-cpp                        12.0.0  ha770c72_1_cpu           conda-forge/linux-64      29kB
  + asciitree                         0.3.3  py_2                     conda-forge/noarch         6kB
  + attr                              2.5.1  h166bdaf_1               conda-forge/linux-64      71kB
  + aws-c-auth                       0.6.26  h2c7c9e7_6               conda-forge/linux-64      95kB
  + aws-c-cal                        0.5.26  h71eb795_0               conda-forge/linux-64      50kB
  + aws-c-common                     0.8.17  hd590300_0               conda-forge/linux-64     196kB
  + aws-c-compression                0.2.16  h4f47f36_6               conda-forge/linux-64      19kB
  + aws-c-event-stream               0.2.20  h69ce273_6               conda-forge/linux-64      54kB
  + aws-c-http                        0.7.7  h7b8353a_3               conda-forge/linux-64     192kB
  + aws-c-io                        0.13.21  h2c99d58_4               conda-forge/linux-64     140kB
  + aws-c-mqtt                        0.8.6  h3a1964a_15              conda-forge/linux-64     144kB
  + aws-c-s3                          0.2.8  h0933b68_4               conda-forge/linux-64      75kB
  + aws-c-sdkutils                    0.1.9  h4f47f36_1               conda-forge/linux-64      53kB
  + aws-checksums                    0.1.14  h4f47f36_6               conda-forge/linux-64      50kB
  + aws-crt-cpp                      0.19.9  h85076f6_5               conda-forge/linux-64     310kB
  + aws-sdk-cpp                     1.10.57  hf40e4db_10              conda-forge/linux-64       4MB
  + blosc                            1.21.3  hafa529b_0               conda-forge/linux-64      40kB
  + bokeh                             3.1.1  pyhd8ed1ab_0             conda-forge/noarch         6MB
  + bottleneck                        1.3.7  py310h0a54255_0          conda-forge/linux-64     123kB
  + brotli                            1.0.9  h166bdaf_8               conda-forge/linux-64      19kB
  + brotli-bin                        1.0.9  h166bdaf_8               conda-forge/linux-64      20kB
  + c-ares                           1.18.1  h7f98852_0               conda-forge/linux-64     115kB
  + cachetools                        5.3.0  pyhd8ed1ab_0             conda-forge/noarch        14kB
  + cairo                            1.16.0  h35add3b_1015            conda-forge/linux-64       1MB
  + cartopy                          0.21.1  py310h7eb24ba_1          conda-forge/linux-64       2MB
  + cf_xarray                         0.8.1  pyhd8ed1ab_0             conda-forge/noarch        52kB
  + cftime                            1.6.2  py310hde88566_1          conda-forge/linux-64     246kB
  + click                             8.1.3  unix_pyhd8ed1ab_2        conda-forge/noarch        76kB
  + cloudpickle                       2.2.1  pyhd8ed1ab_0             conda-forge/noarch        28kB
  + colorama                          0.4.6  pyhd8ed1ab_0             conda-forge/noarch        25kB
  + contourpy                         1.0.7  py310hdf3cbec_0          conda-forge/linux-64     216kB
  + curl                              8.0.1  h588be90_0               conda-forge/linux-64      90kB
  + cycler                           0.11.0  pyhd8ed1ab_0             conda-forge/noarch        10kB
  + cytoolz                          0.12.0  py310h5764c6d_1          conda-forge/linux-64     398kB
  + dask                           2023.5.0  pyhd8ed1ab_0             conda-forge/noarch         7kB
  + dask-core                      2023.5.0  pyhd8ed1ab_0             conda-forge/noarch       845kB
  + dav1d                             1.2.0  hd590300_0               conda-forge/linux-64     759kB
  + dbus                             1.13.6  h5008d03_3               conda-forge/linux-64     619kB
  + distributed                    2023.5.0  pyhd8ed1ab_0             conda-forge/noarch       768kB
  + esmf                              8.4.2  mpi_mpich_h742b71d_100   conda-forge/linux-64      24MB
  + esmpy                             8.4.2  pyhc1e730c_0             conda-forge/noarch        48MB
  + expat                             2.5.0  hcb278e6_1               conda-forge/linux-64     137kB
  + fasteners                        0.17.3  pyhd8ed1ab_0             conda-forge/noarch        20kB
  + ffmpeg                            5.1.2  gpl_h9866456_109         conda-forge/linux-64      10MB
  + font-ttf-dejavu-sans-mono          2.37  hab24e00_0               conda-forge/noarch       397kB
  + font-ttf-inconsolata              3.000  h77eed37_0               conda-forge/noarch        97kB
  + font-ttf-source-code-pro          2.038  h77eed37_0               conda-forge/noarch       701kB
  + font-ttf-ubuntu                    0.83  hab24e00_0               conda-forge/noarch         2MB
  + fontconfig                       2.14.2  h14ed4e7_0               conda-forge/linux-64     272kB
  + fonts-conda-ecosystem                 1  0                        conda-forge/noarch         4kB
  + fonts-conda-forge                     1  0                        conda-forge/noarch         4kB
  + fonttools                        4.39.4  py310h2372a71_0          conda-forge/linux-64       2MB
  + freetype                         2.12.1  hca18f0e_1               conda-forge/linux-64     626kB
  + fribidi                          1.0.10  h36c2ea0_0               conda-forge/linux-64     114kB
  + fsspec                         2023.5.0  pyh1a96a4e_0             conda-forge/noarch       116kB
  + future                           0.18.3  pyhd8ed1ab_0             conda-forge/noarch       366kB
  + geographiclib                      1.52  pyhd8ed1ab_0             conda-forge/noarch        36kB
  + geopy                             2.3.0  pyhd8ed1ab_0             conda-forge/noarch        70kB
  + geos                             3.11.2  hcb278e6_0               conda-forge/linux-64       2MB
  + gettext                          0.21.1  h27087fc_0               conda-forge/linux-64       4MB
  + gflags                            2.2.2  he1b5a44_1004            conda-forge/linux-64     117kB
  + glib                             2.76.2  hfc55251_0               conda-forge/linux-64     484kB
  + glib-tools                       2.76.2  hfc55251_0               conda-forge/linux-64     112kB
  + glog                              0.6.0  h6f12383_0               conda-forge/linux-64     114kB
  + gmp                               6.2.1  h58526e2_0               conda-forge/linux-64     826kB
  + gnutls                            3.7.8  hf3e180e_0               conda-forge/linux-64       2MB
  + graphite2                        1.3.13  h58526e2_1001            conda-forge/linux-64     105kB
  + gst-plugins-base                 1.22.0  h4243ec0_2               conda-forge/linux-64       3MB
  + gstreamer                        1.22.0  h25f0c4b_2               conda-forge/linux-64       2MB
  + harfbuzz                          7.3.0  hdb3a94d_0               conda-forge/linux-64       1MB
  + hdf4                             4.2.15  h501b40f_6               conda-forge/linux-64     758kB
  + hdf5                             1.14.0  mpi_mpich_hcccbd3f_3     conda-forge/linux-64       4MB
  + intake                            0.6.8  pyhd8ed1ab_0             conda-forge/noarch       188kB
  + intake-xarray                     0.6.1  pyhd8ed1ab_0             conda-forge/noarch         1MB
  + keyutils                          1.6.1  h166bdaf_0               conda-forge/linux-64     118kB
  + kiwisolver                        1.4.4  py310hbf28c38_1          conda-forge/linux-64      77kB
  + krb5                             1.20.1  h81ceb04_0               conda-forge/linux-64       1MB
  + lame                              3.100  h166bdaf_1003            conda-forge/linux-64     508kB
  + lcms2                              2.15  haa2dc70_1               conda-forge/linux-64     242kB
  + lerc                              4.0.0  h27087fc_0               conda-forge/linux-64     282kB
  + libabseil                    20230125.0  cxx17_hcb278e6_1         conda-forge/linux-64       1MB
  + libaec                            1.0.6  hcb278e6_1               conda-forge/linux-64      34kB
  + libarrow                         12.0.0  h1cdf7b0_1_cpu           conda-forge/linux-64      27MB
  + libass                           0.17.1  hc9aadba_0               conda-forge/linux-64     126kB
  + libblas                           3.9.0  16_linux64_openblas      conda-forge/linux-64      13kB
  + libbrotlicommon                   1.0.9  h166bdaf_8               conda-forge/linux-64      67kB
  + libbrotlidec                      1.0.9  h166bdaf_8               conda-forge/linux-64      34kB
  + libbrotlienc                      1.0.9  h166bdaf_8               conda-forge/linux-64     295kB
  + libcap                             2.67  he9d0100_0               conda-forge/linux-64      99kB
  + libcblas                          3.9.0  16_linux64_openblas      conda-forge/linux-64      13kB
  + libclang                         16.0.3  default_h83cc7fd_0       conda-forge/linux-64      21kB
  + libclang13                       16.0.3  default_hd781213_0       conda-forge/linux-64      10MB
  + libcrc32c                         1.1.2  h9c3ff4c_0               conda-forge/linux-64      20kB
  + libcups                           2.3.3  h36d4200_3               conda-forge/linux-64       5MB
  + libcurl                           8.0.1  h588be90_0               conda-forge/linux-64     361kB
  + libdeflate                         1.18  h0b41bf4_0               conda-forge/linux-64      65kB
  + libdrm                          2.4.114  h166bdaf_0               conda-forge/linux-64     305kB
  + libedit                    3.1.20191231  he28a2e2_2               conda-forge/linux-64     124kB
  + libev                              4.33  h516909a_1               conda-forge/linux-64     106kB
  + libevent                         2.1.12  h3358134_0               conda-forge/linux-64     428kB
  + libexpat                          2.5.0  hcb278e6_1               conda-forge/linux-64      78kB
  + libflac                           1.4.2  h27087fc_0               conda-forge/linux-64     421kB
  + libgcrypt                        1.10.1  h166bdaf_0               conda-forge/linux-64     720kB
  + libgfortran-ng                   12.2.0  h69a702a_19              conda-forge/linux-64      23kB
  + libgfortran5                     12.2.0  h337968e_19              conda-forge/linux-64       2MB
  + libglib                          2.76.2  hebfc3b9_0               conda-forge/linux-64       3MB
  + libgoogle-cloud                  2.10.0  hac9eb74_0               conda-forge/linux-64      39MB
  + libgpg-error                       1.46  h620e276_0               conda-forge/linux-64     258kB
  + libgrpc                          1.54.2  hcf146ea_0               conda-forge/linux-64       6MB
  + libiconv                           1.17  h166bdaf_0               conda-forge/linux-64       1MB
  + libidn2                           2.3.4  h166bdaf_0               conda-forge/linux-64     160kB
  + libjpeg-turbo                   2.1.5.1  h0b41bf4_0               conda-forge/linux-64     491kB
  + liblapack                         3.9.0  16_linux64_openblas      conda-forge/linux-64      13kB
  + libllvm11                        11.1.0  he0ac6c6_5               conda-forge/linux-64      30MB
  + libllvm16                        16.0.3  hbf9e925_1               conda-forge/linux-64      35MB
  + libnetcdf                         4.9.2  mpi_mpich_h53eaf7b_4     conda-forge/linux-64     826kB
  + libnghttp2                       1.52.0  h61bc06f_0               conda-forge/linux-64     622kB
  + libnuma                          2.0.16  h0b41bf4_1               conda-forge/linux-64      41kB
  + libogg                            1.3.4  h7f98852_1               conda-forge/linux-64     211kB
  + libopenblas                      0.3.21  pthreads_h78a6416_3      conda-forge/linux-64      11MB
  + libopus                           1.3.1  h7f98852_1               conda-forge/linux-64     261kB
  + libpciaccess                       0.17  h166bdaf_0               conda-forge/linux-64      40kB
  + libpng                           1.6.39  h753d276_0               conda-forge/linux-64     283kB
  + libpq                              15.3  hbcd7760_0               conda-forge/linux-64       2MB
  + libprotobuf                     3.21.12  h3eb15da_0               conda-forge/linux-64       2MB
  + libsndfile                        1.2.0  hb75c966_0               conda-forge/linux-64     350kB
  + libssh2                          1.10.0  hf14f497_3               conda-forge/linux-64     239kB
  + libsystemd0                         253  h8c4010b_1               conda-forge/linux-64     381kB
  + libtasn1                         4.19.0  h166bdaf_0               conda-forge/linux-64     117kB
  + libthrift                        0.18.1  h8fd135c_1               conda-forge/linux-64       4MB
  + libtiff                           4.5.0  ha587672_6               conda-forge/linux-64     407kB
  + libunistring                     0.9.10  h7f98852_0               conda-forge/linux-64       1MB
  + libutf8proc                       2.8.0  h166bdaf_0               conda-forge/linux-64     101kB
  + libva                            2.18.0  h0b41bf4_0               conda-forge/linux-64     187kB
  + libvorbis                         1.3.7  h9c3ff4c_0               conda-forge/linux-64     286kB
  + libvpx                           1.13.0  hcb278e6_0               conda-forge/linux-64     987kB
  + libwebp-base                      1.3.0  h0b41bf4_0               conda-forge/linux-64     357kB
  + libxcb                             1.13  h7f98852_1004            conda-forge/linux-64     400kB
  + libxkbcommon                      1.5.0  h79f4944_1               conda-forge/linux-64     563kB
  + libxml2                          2.10.4  hfdac1af_0               conda-forge/linux-64     714kB
  + libzip                            1.9.2  hc929e4a_1               conda-forge/linux-64      99kB
  + llvmlite                         0.39.1  py310h58363a5_1          conda-forge/linux-64       3MB
  + locket                            1.0.0  pyhd8ed1ab_0             conda-forge/noarch         8kB
  + lz4                               4.3.2  py310h0cfdcf0_0          conda-forge/linux-64      37kB
  + lz4-c                             1.9.4  hcb278e6_0               conda-forge/linux-64     143kB
  + matplotlib                        3.5.2  py310hff52083_1          conda-forge/linux-64       7kB
  + matplotlib-base                   3.5.2  py310h5701ce4_1          conda-forge/linux-64       8MB
  + mpg123                           1.31.3  hcb278e6_0               conda-forge/linux-64     485kB
  + mpi                                 1.0  mpich                    conda-forge/linux-64       4kB
  + mpich                             4.1.1  h846660c_100             conda-forge/linux-64      19MB
  + msgpack-python                    1.0.5  py310hdf3cbec_0          conda-forge/linux-64      85kB
  + munkres                           1.1.4  pyh9f0ad1d_0             conda-forge/noarch        12kB
  + mysql-common                     8.0.32  hf1915f5_2               conda-forge/linux-64     746kB
  + mysql-libs                       8.0.32  hca2cd23_2               conda-forge/linux-64       2MB
  + netcdf-fortran                    4.6.0  mpi_mpich_hebcc635_5     conda-forge/linux-64     417kB
  + netcdf4                           1.6.3  nompi_py310h2d0b64f_102  conda-forge/linux-64     490kB
  + nettle                            3.8.1  hc379101_1               conda-forge/linux-64       1MB
  + nspr                               4.35  h27087fc_0               conda-forge/linux-64     227kB
  + nss                                3.89  he45b914_0               conda-forge/linux-64       2MB
  + numba                            0.56.4  py310h0e39c9b_1          conda-forge/linux-64       4MB
  + numcodecs                        0.11.0  py310heca2aa9_1          conda-forge/linux-64     671kB
  + numpy                            1.23.5  py310h53a5b5f_0          conda-forge/linux-64       6MB
  + openh264                          2.3.1  hcb278e6_2               conda-forge/linux-64     719kB
  + openjpeg                          2.5.0  hfec8fc6_2               conda-forge/linux-64     352kB
  + orc                               1.8.3  hfdbbad2_0               conda-forge/linux-64     909kB
  + p11-kit                          0.24.1  hc5aa10d_0               conda-forge/linux-64       5MB
  + pandas                            2.0.1  py310h7cbd5c2_1          conda-forge/linux-64      12MB
  + parallelio                       2.5.10  mpi_mpich_h0b4b548_102   conda-forge/linux-64     358kB
  + parquet-cpp                       1.5.1  2                        conda-forge/noarch         3kB
  + partd                             1.4.0  pyhd8ed1ab_0             conda-forge/noarch        20kB
  + pcre2                             10.40  hc3806b6_0               conda-forge/linux-64       2MB
  + pillow                            9.5.0  py310h065c6d2_0          conda-forge/linux-64      46MB
  + pixman                           0.40.0  h36c2ea0_0               conda-forge/linux-64     643kB
  + ply                                3.11  py_1                     conda-forge/noarch        45kB
  + pooch                             1.7.0  pyha770c72_3             conda-forge/noarch        51kB
  + proj                              9.2.0  h8ffa02c_0               conda-forge/linux-64       3MB
  + pthread-stubs                       0.4  h36c2ea0_1001            conda-forge/linux-64       6kB
  + pulseaudio-client                  16.1  h5195f5e_3               conda-forge/linux-64     752kB
  + pyarrow                          12.0.0  py310he6bfd7f_1_cpu      conda-forge/linux-64       4MB
  + pyparsing                         3.0.9  pyhd8ed1ab_0             conda-forge/noarch        81kB
  + pyproj                            3.5.0  py310hb814896_1          conda-forge/linux-64     448kB
  + pyqt                             5.15.7  py310hab646b1_3          conda-forge/linux-64       5MB
  + pyqt5-sip                       12.11.0  py310heca2aa9_3          conda-forge/linux-64      85kB
  + pyshp                             2.3.1  pyhd8ed1ab_0             conda-forge/noarch       964kB
  + python-tzdata                    2023.3  pyhd8ed1ab_0             conda-forge/noarch       143kB
  + pyyaml                              6.0  py310h5764c6d_5          conda-forge/linux-64     176kB
  + qt-main                          5.15.8  haa3a1c2_11              conda-forge/linux-64      61MB
  + re2                          2023.02.02  hcb278e6_0               conda-forge/linux-64     201kB
  + rise                              5.7.1  py310hff52083_2          conda-forge/linux-64       3MB
  + s2n                              1.3.44  h06160fa_0               conda-forge/linux-64     368kB
  + scipy                            1.10.1  py310ha4c1d20_3          conda-forge/linux-64      15MB
  + shapely                           2.0.1  py310h056c13c_1          conda-forge/linux-64     423kB
  + sip                               6.7.9  py310hc6cd4ac_0          conda-forge/linux-64     493kB
  + snappy                           1.1.10  h9fff704_0               conda-forge/linux-64      39kB
  + sortedcontainers                  2.4.0  pyhd8ed1ab_0             conda-forge/noarch        26kB
  + sparse                           0.14.0  pyhd8ed1ab_0             conda-forge/noarch        66kB
  + sqlite                           3.41.2  h2c6b66d_1               conda-forge/linux-64     808kB
  + svt-av1                           1.4.1  hcb278e6_0               conda-forge/linux-64       2MB
  + tblib                             1.7.0  pyhd8ed1ab_0             conda-forge/noarch        15kB
  + toml                             0.10.2  pyhd8ed1ab_0             conda-forge/noarch        18kB
  + toolz                            0.12.0  pyhd8ed1ab_0             conda-forge/noarch        49kB
  + tqdm                             4.65.0  pyhd8ed1ab_1             conda-forge/noarch        88kB
  + ucx                              1.14.0  h3484d09_2               conda-forge/linux-64      12MB
  + unicodedata2                     15.0.0  py310h5764c6d_0          conda-forge/linux-64     512kB
  + x264                         1!164.3095  h166bdaf_2               conda-forge/linux-64     898kB
  + x265                                3.5  h924138e_3               conda-forge/linux-64       3MB
  + xarray                         2023.4.2  pyhd8ed1ab_0             conda-forge/noarch       664kB
  + xcb-util                          0.4.0  h516909a_0               conda-forge/linux-64      20kB
  + xcb-util-image                    0.4.0  h166bdaf_0               conda-forge/linux-64      24kB
  + xcb-util-keysyms                  0.4.0  h516909a_0               conda-forge/linux-64      12kB
  + xcb-util-renderutil               0.3.9  h166bdaf_0               conda-forge/linux-64      16kB
  + xcb-util-wm                       0.4.1  h516909a_0               conda-forge/linux-64      56kB
  + xesmf                             0.7.1  pyhd8ed1ab_0             conda-forge/noarch        41kB
  + xgcm                              0.8.1  pyhd8ed1ab_0             conda-forge/noarch        80kB
  + xkeyboard-config                   2.38  h0b41bf4_0               conda-forge/linux-64     882kB
  + xmitgcm                           0.5.2  pyhd8ed1ab_0             conda-forge/noarch        89kB
  + xorg-fixesproto                     5.0  h7f98852_1002            conda-forge/linux-64       9kB
  + xorg-kbproto                      1.0.7  h7f98852_1002            conda-forge/linux-64      27kB
  + xorg-libice                      1.0.10  h7f98852_0               conda-forge/linux-64      59kB
  + xorg-libsm                        1.2.3  hd9c2040_1000            conda-forge/linux-64      26kB
  + xorg-libx11                       1.8.4  h0b41bf4_0               conda-forge/linux-64     830kB
  + xorg-libxau                       1.0.9  h7f98852_0               conda-forge/linux-64      13kB
  + xorg-libxdmcp                     1.1.3  h7f98852_0               conda-forge/linux-64      19kB
  + xorg-libxext                      1.3.4  h0b41bf4_2               conda-forge/linux-64      50kB
  + xorg-libxfixes                    5.0.3  h7f98852_1004            conda-forge/linux-64      18kB
  + xorg-libxrender                  0.9.10  h7f98852_1003            conda-forge/linux-64      33kB
  + xorg-renderproto                 0.11.1  h7f98852_1002            conda-forge/linux-64      10kB
  + xorg-xextproto                    7.3.0  h0b41bf4_1003            conda-forge/linux-64      30kB
  + xorg-xf86vidmodeproto             2.3.1  h7f98852_1002            conda-forge/linux-64      24kB
  + xorg-xproto                      7.0.31  h7f98852_1007            conda-forge/linux-64      75kB
  + xyzservices                    2023.2.0  pyhd8ed1ab_0             conda-forge/noarch        36kB
  + yaml                              0.2.5  h7f98852_2               conda-forge/linux-64      89kB
  + zarr                             2.14.2  pyhd8ed1ab_0             conda-forge/noarch       156kB
  + zict                              3.0.0  pyhd8ed1ab_0             conda-forge/noarch        36kB
  + zstd                              1.5.2  h3eb15da_6               conda-forge/linux-64     420kB

  Upgrade:
──────────────────────────────────────────────────────────────────────────────────────────────────────

  - icu                                70.1  h27087fc_0               conda-forge                   
  + icu                                72.1  hcb278e6_0               conda-forge/linux-64      12MB
  - ipython                          8.12.0  pyh41d4057_0             conda-forge                   
  + ipython                          8.13.2  pyh41d4057_0             conda-forge/noarch       583kB
  - libsqlite                        3.40.0  h753d276_0               conda-forge                   
  + libsqlite                        3.41.2  h2797004_1               conda-forge/linux-64     819kB
  - pip                              23.0.1  pyhd8ed1ab_0             conda-forge                   
  + pip                              23.1.2  pyhd8ed1ab_0             conda-forge/noarch         1MB
  - python                          3.10.10  he550d4f_0_cpython       conda-forge                   
  + python                          3.10.11  he550d4f_0_cpython       conda-forge/linux-64      26MB

  Downgrade:
──────────────────────────────────────────────────────────────────────────────────────────────────────

  - nodejs                          18.15.0  h8d033a5_0               conda-forge                   
  + nodejs                          16.19.0  h4abf6b9_1               conda-forge/linux-64      14MB

  Summary:

  Install: 238 packages
  Upgrade: 5 packages
  Downgrade: 1 packages

  Total download: 617MB

──────────────────────────────────────────────────────────────────────────────────────────────────────

Downloading and Extracting Packages

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Rolling back transaction: ...working... ERROR conda.core.link:_execute(745): An error occurred while installing package 'conda-forge::rise-5.7.1-py310hff52083_2'.
done

LinkError: post-link script failed for package conda-forge::rise-5.7.1-py310hff52083_2
location of failed script: /srv/conda/envs/notebook/bin/.rise-post-link.sh
==> script messages <==
<None>
==> script output <==
stdout: 
stderr: Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3105, in _dep_map
    return self.__dep_map
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 2901, in __getattr__
    raise AttributeError(attr)
AttributeError: _DistInfoDistribution__dep_map

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3096, in _parsed_pkg_info
    return self._pkg_info
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 2901, in __getattr__
    raise AttributeError(attr)
AttributeError: _pkg_info. Did you mean: 'egg_info'?

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/bin/jupyter-nbextension", line 10, in <module>
    sys.exit(main())
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/jupyter_core/application.py", line 277, in launch_instance
    return super().launch_instance(argv=argv, **kwargs)
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/traitlets/config/application.py", line 1043, in launch_instance
    app.start()
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/notebook/nbextensions.py", line 972, in start
    super().start()
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/jupyter_core/application.py", line 266, in start
    self.subapp.start()
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/notebook/nbextensions.py", line 882, in start
    self.toggle_nbextension_python(self.extra_args[0])
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/notebook/nbextensions.py", line 855, in toggle_nbextension_python
    return toggle(module,
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/notebook/nbextensions.py", line 470, in enable_nbextension_python
    return _set_nbextension_state_python(True, module, user, sys_prefix,
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/notebook/nbextensions.py", line 368, in _set_nbextension_state_python
    m, nbexts = _get_nbextension_metadata(module)
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/notebook/nbextensions.py", line 1107, in _get_nbextension_metadata
    m = import_item(module)
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/traitlets/utils/importstring.py", line 38, in import_item
    return __import__(parts[0])
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/rise/__init__.py", line 3, in <module>
    __version__ = pkg_resources.require("rise")[0].version
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 966, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 832, in resolve
    new_requirements = dist.requires(req.extras)[::-1]
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 2821, in requires
    dm = self._dep_map
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3107, in _dep_map
    self.__dep_map = self._compute_dependencies()
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3116, in _compute_dependencies
    for req in self._parsed_pkg_info.get_all('Requires-Dist') or []:
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 3098, in _parsed_pkg_info
    metadata = self.get_metadata(self.PKG_INFO)
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1517, in get_metadata
    value = self._get(path)
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1726, in _get
    with open(path, 'rb') as stream:
FileNotFoundError: [Errno 2] No such file or directory: '/srv/conda/envs/notebook/lib/python3.10/site-packages/ipython-8.12.0.dist-info/METADATA'

return code: 1

()

time: 168.969
Removing intermediate container 0ed2c338b52e
The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '' returned a non-zero code: 1

I am working on a PR that I should be ready to initialize today. Perhaps things will be different afterwards?

malmans2 commented 1 year ago

See also https://link.medium.com/hKCwbsWCPzb

Mikejmnez commented 1 year ago

Binder is slowly coming back to life. I was able to build it earlier today and ran the successfully ran the notebooks with the updates environment. Closing this issue now.