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hakyim / TO-DELETE-PrediXcan

Code for the in-dev PrediXcan Project
MIT License
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What is the parameter setting when using the elastic net in prediction #28

Open yuanzhongshang opened 6 years ago

yuanzhongshang commented 6 years ago

Hi, Sorry for interrupting you. I wonder What is the parameter setting when using the elastic net in prediction?Just the default setting in the glmnet package? For instance, how to choose the lambda in real data? And what is your setting in your NG paper?

Thanks a lot. Bests, Zhongshang

hakyim commented 6 years ago

Here is our current pipeline, which should have the information you are seeking.

https://github.com/hakyimlab/PredictDB_Pipeline_GTEx_v7

Does this help?

Haky

On Thu, Apr 12, 2018 at 12:05 PM, yuanzhongshang notifications@github.com wrote:

Hi, Sorry for interrupting you. I wonder What is the parameter setting when using the elastic net in prediction?Just the default setting in the glmnet package? For instance, how to choose the lambda in real data? And what is your setting in your NG paper?

Thanks a lot. Bests, Zhongshang

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yuanzhongshang commented 6 years ago

Thanks for your timely reply. It is quite helpful. Thanks again.