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hakyimlab / brainxcan

MIT License
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verison of R? #5

Closed mooreann closed 11 months ago

mooreann commented 11 months ago

Hi! What version of R did you guys use to write the snakemake scripts? I keep getting weird dependency issues for packages that don't seem to install on some versions of R (ie rgeos, rgdal) when I run the snakemake script. Thanks!

shafiqnoa commented 11 months ago

hi @mooreann did you solve it. I am having similar issue. it would be great if you can share your solution.

mooreann commented 11 months ago

Yes! I was able to

  1. install terra via mamba install -c conda-forge r-terra, which allowed me to then

  2. install.packages("raster") in R

  3. rgeos has been archived, but was able to install it manually in R via

    packageurl <- "https://cran.r-project.org/src/contrib/Archive/rgeos/rgeos_0.6-4.tar.gz" install.packages(packageurl, repos=NULL, type="source")

shafiqnoa commented 11 months ago

Thank you very much for your reply. I am still encountering an error with rgeos. May I ask which version of R you used for this?