Closed halasadi closed 9 years ago
1). What is the problem we are tackling? What have previous studies done and what are their flaws
See : https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/introduction.pdf
2). Exploratory data analysis on the data : PCA and general Admixture
See : https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/plot_exploratory.pdf
3a). Talk about the basic model without sampling correction.
See: https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/model_1.pdf
3b). We simulated under the WF model. Show the drift factor and how it's not a problem. Show how finite sample size can introduce a lot of error.
See : http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/example_sim_drift_old.html
3c). Show the real data analysis
See: http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/Haak_data_analysis_model_1.html
4). We've developed a modification and show the doc that we've prepared.
See : https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/model_2.pdf
5a). Under the new model, show results under simulations with and without drift and talk about sampling correction
See: https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/example_sim_drift_new.pdf
5b). Apply the new model to the Haak Human Origins data
See: http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/Haak_data_analysis_model_2.html
6). Discussions
See: http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/discussion.html
1). What is the problem we are tackling? What have previous studies done and what are their flaws
See : https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/introduction.pdf
2). Exploratory data analysis on the data : PCA and general Admixture
See : https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/plot_exploratory.pdf
3a). Talk about the basic model without sampling correction.
See: https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/model_1.pdf
3b). We simulated under the WF model. Show the drift factor and how it's not a problem. Show how finite sample size can introduce a lot of error.
See : http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/example_sim_drift_old.html
3c). Show the real data analysis
See: http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/Haak_data_analysis_model_1.html
4). We've developed a modification and show the doc that we've prepared.
See : https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/model_2.pdf
5a). Under the new model, show results under simulations with and without drift and talk about sampling correction
See: https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/example_sim_drift_new.pdf
5b). Apply the new model to the Haak Human Origins data
See: http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/Haak_data_analysis_model_2.html
6). Discussions
See: http://htmlpreview.github.com/?https://github.com/halasadi/ancient-structure/blob/master/docs/Matthew%20report/discussion.html