halasadi / ancient-structure

w/ Kushal
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Check if more structure to moderns after ancient clusters are adjusted #23

Closed kkdey closed 8 years ago

kkdey commented 9 years ago

Compare the moderns data loglikelihood from the estimated Q and F from the modern+ancient pooled data and the modern data loglikelihood from the estimated Q and F from just the modern data. Check if the loglikelihoods are entirely different or not. If different, it shows there is additional variation between the moderns not accounted for by the ancient source populations.

kkdey commented 8 years ago

Moderns only loglikelihoods :

Loglikelihood value K=3, moderns only: -44972467 Loglikelihood value K=5, moderns only: -44773702 Loglikelihood value K=7, moderns only: -44605039

Moderns loglikelihood from pooled data:

Loglikelihood value K=3, moderns from pooled analysis: -45198942 Loglikelihood value K=5, moderns from pooled analysis: -45188202 Loglikelihood value K=7, moderns from pooled analysis: -45180066