Feat: Use Static JSON API for AlphaMissense Scores - Githubissues

halbritter-lab / Amissense

The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.

MIT License

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Feat: Use Static JSON API for AlphaMissense Scores #23

Closed berntpopp closed 3 months ago

berntpopp commented 3 months ago

Description:
Incorporate the static JSON API for AlphaMissense scores hosted at https://github.com/halbritter-lab/alpha-missense-scores/tree/main/scores/json. This will streamline the process of fetching AlphaMissense scores and eliminate the need for repeated downloads.

Proposed Solution:

Implement a function to fetch AlphaMissense scores directly from the static JSON API.
Use this API as the default source for AlphaMissense scores.
Allow fallback to the local TSV/JSON files if the API is unavailable.