The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.
Description:
The pipeline.py file currently contains too much logic, making it harder to maintain. The orchestration of the pipeline should be separated from the actual function implementations.
Proposed Solution:
Move all specific processing functions out of pipeline.py into dedicated modules.
Ensure that pipeline.py is only responsible for orchestrating the pipeline and calling the relevant functions.
Description:
The
pipeline.pyfile currently contains too much logic, making it harder to maintain. The orchestration of the pipeline should be separated from the actual function implementations.Proposed Solution:
pipeline.pyinto dedicated modules.pipeline.pyis only responsible for orchestrating the pipeline and calling the relevant functions.