The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.
Description:
During the pipeline execution for the NAA10 gene, there was a failure in fetching ClinVar summaries with an error message indicating "Expecting value: line 1 column 1 (char 0)." Steps to Reproduce:
Run the command: `python -m Amissense.cli pipeline -g NAA10 -o out`. Observed Behavior:
The pipeline fails when fetching ClinVar summaries and logs an error message related to a network-related issue. Expected Behavior:
The pipeline should handle such network issues gracefully or retry fetching the summaries, preventing the process from failing.
Description:
During the pipeline execution for the NAA10 gene, there was a failure in fetching ClinVar summaries with an error message indicating "Expecting value: line 1 column 1 (char 0)."
Steps to Reproduce:
Observed Behavior:
Expected Behavior: