The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.
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Bug: generate_pathogenicity_pdb no longer modifies PDB files #43
Description:
The generate_pathogenicity_pdb function, which was previously responsible for adding pathogenicity information to PDB files, is no longer functioning as expected. The PDB files are not being modified, resulting in missing pathogenicity data.
Expected Behavior:
PDB files should be modified to include pathogenicity information as intended.
Proposed Solution:
Investigate the current implementation of generate_pathogenicity_pdb.
Compare with older versions to identify the issue.
Restore the functionality to ensure that PDB files are correctly modified with pathogenicity data.
Description: The
generate_pathogenicity_pdbfunction, which was previously responsible for adding pathogenicity information to PDB files, is no longer functioning as expected. The PDB files are not being modified, resulting in missing pathogenicity data.Expected Behavior:
Proposed Solution:
generate_pathogenicity_pdb.