Option to Specify Output Needed

halelab / GBS-SNP-CROP

GBS SNP Calling Reference Optional Pipeline

GNU General Public License v2.0

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Option to Specify Output Needed #11

Closed andydish closed 7 years ago

andydish commented 7 years ago

I'm trying to run your scripts on a cluster, and am having a slight issue with the input and output file paths specified in your program. I'd like to be able to specify different input and output paths from the command line, rather than having to manually edit the output file paths in each of your scripts. Would it be at all possible for you to add a command line option for output file path?

I'd really appreciate it-otherwise your program has been working great for my data!

halelab commented 7 years ago

Hi @andydish

I really apologize for never answer back to you. I support the google group and sometimes I look at here. Sorry. The GBS-SNP-CROP was written to save the outputs in appropriated directories, which is easy to keep track of the outputs and potential errors.

Best, Arthur