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halelab / GBS-SNP-CROP

GBS SNP Calling Reference Optional Pipeline
GNU General Public License v2.0
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VCF file only partially tab delimited #28

Open rbrauning opened 4 years ago

rbrauning commented 4 years ago

Hi, I noticed that sample info in VCF files is space delimited.

https://github.com/halelab/GBS-SNP-CROP/blob/162f7197c62ae5dd35a4b18b6001fbea8e65f2ed/GBS-SNP-CROP-scripts/v.4.1/GBS-SNP-CROP-8.pl#L384 should have sample info tab delimited, just like the solution in v4, https://github.com/halelab/GBS-SNP-CROP/blob/162f7197c62ae5dd35a4b18b6001fbea8e65f2ed/GBS-SNP-CROP-scripts/v.4.0/GBS-SNP-CROP-8.pl#L382-L383

jgarbe256 commented 4 years ago

The sample names (@TaxaNames) in the VCF header line also need to be tab-delimited, as in v4 my $Names = join "\t", @TaxaNames;