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halestudio / hale

(Spatial) data harmonisation with hale»studio (formerly HUMBOLDT Alignment Editor)
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Update org.deegree so that it can be used in hale studio that uses java 17 #1002

Open kapil-agnihotri opened 1 year ago

kapil-agnihotri commented 1 year ago

Units tests that are run on `` bundle fails due to missing jaxb-api on classpath.

This happens because, org.deegree still refers to javax.xml libraries for jaxb related dependencies. However, after migrating hale studio with java17, jdk no more provides javax.xml and Jakarta dependencies must be used.

This ticket is to add Jakarta dependencies to org.deegree so that this bundle can again be included in the hale studio.

excluded bundles from the product

- eu.esdihumboldt.hale.io.deegree
- eu.esdihumboldt.hale.io.deegree.ui
- eu.esdihumboldt.hale.io.deegree.test

excluded feature from Hale.product

eu.esdihumboldt.hale.io.feature.deegree

Stacktrace of the errors:

18.11.2022 11:57:17 ERROR o.d.c.x.j.JAXBUtils.getUnmarshaller(118) - Unable to instantiate JAXBContext for package 'org.deegree.cs.persistence.deegree.d3.jaxb'
18.11.2022 11:57:17 ERROR o.d.c.p.d.d.DeegreeCRSStoreProvider.getCRSStore(113) - Error in crs store configuration file 'bundleresource://398.fwk563161564/org/deegree/cs/persistence/default.xml': Implementation of JAXB-API has not been found on module path or classpath.
18.11.2022 11:57:17 ERROR o.d.c.p.CRSManager.handleConfigFile(194) - Error creating crs store: Error in crs store configuration file 'bundleresource://398.fwk563161564/org/deegree/cs/persistence/default.xml': Implementation of JAXB-API has not been found on module path or classpath.
E.18.11.2022 11:57:20 WARN  o.d.g.s.GMLSchemaInfoSet.buildGeometryPropertyType(987) - Unhandled particle: MODEL_GROUP
E
2 test(s) run. Time: 9540ms

2 failures:
1) testSuccessSaveConfig(eu.esdihumboldt.hale.io.deegree.mapping.MappingWriterTest)
org.deegree.commons.tom.ReferenceResolvingException: Unable to resolve reference to 'EPSG:4326'.
    at org.deegree.commons.tom.Reference.getReferencedObject(Reference.java:164)
    at org.deegree.cs.refs.coordinatesystem.CRSRef.getReferencedObject(CRSRef.java:239)
    at org.deegree.cs.refs.coordinatesystem.CRSRef.getDimension(CRSRef.java:224)
    at eu.esdihumboldt.hale.io.deegree.mapping.config.GenericMappingConfiguration.getGeometryStorageParameters(GenericMappingConfiguration.java:246)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingHelper.mapApplicationSchema(MappingHelper.groovy:36)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriter.getMappedSchema(MappingWriter.java:296)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriter.saveConfig(MappingWriter.java:134)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriter$saveConfig.call(Unknown Source)
    at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriterTest$_testSuccessSaveConfig_closure1.doCall(MappingWriterTest.groovy:50)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:568)
    at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
    at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
    at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
    at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
    at groovy.lang.Closure.call(Closure.java:405)
    at groovy.lang.Closure.call(Closure.java:421)
    at org.codehaus.groovy.runtime.IOGroovyMethods.withStream(IOGroovyMethods.java:1297)
    at org.codehaus.groovy.runtime.ResourceGroovyMethods.withOutputStream(ResourceGroovyMethods.java:1838)
    at org.codehaus.groovy.runtime.dgm$1082.invoke(Unknown Source)
    at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
    at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
    at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriterTest.testSuccessSaveConfig(MappingWriterTest.groovy:50)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:568)
    at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
    at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
    at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
    at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
    at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
    at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
    at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
    at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
    at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
    at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
    at org.junit.runners.Suite.runChild(Suite.java:128)
    at org.junit.runners.Suite.runChild(Suite.java:27)
    at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
    at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
    at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:137)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:115)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:105)
    at de.fhg.igd.equinox.test.app.runner.TestExecutor.executeTests(TestExecutor.java:104)
    at de.fhg.igd.equinox.test.app.runner.TestRunner.runTests(TestRunner.java:115)
    at de.fhg.igd.equinox.test.app.runner.TestRunner.execute(TestRunner.java:90)
    at de.fhg.igd.equinox.test.app.TestRunnerApplication.run(TestRunnerApplication.java:80)
    at de.fhg.igd.equinox.test.app.TestRunnerApplication.run(TestRunnerApplication.java:1)
    at de.fhg.igd.equinox.test.app.internal.AbstractApplication.run(AbstractApplication.java:55)
    at de.fhg.igd.equinox.test.app.internal.AbstractApplication.start(AbstractApplication.java:37)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
    at org.eclipse.equinox.internal.app.AnyThreadAppLauncher.run(AnyThreadAppLauncher.java:30)
    at java.base/java.lang.Thread.run(Thread.java:833)
2) testSuccessSaveDDL(eu.esdihumboldt.hale.io.deegree.mapping.MappingWriterTest)
org.deegree.commons.tom.ReferenceResolvingException: Unable to resolve reference to 'EPSG:4326'.
    at org.deegree.commons.tom.Reference.getReferencedObject(Reference.java:164)
    at org.deegree.cs.refs.coordinatesystem.CRSRef.getReferencedObject(CRSRef.java:239)
    at org.deegree.cs.refs.coordinatesystem.CRSRef.getDimension(CRSRef.java:224)
    at eu.esdihumboldt.hale.io.deegree.mapping.config.GenericMappingConfiguration.getGeometryStorageParameters(GenericMappingConfiguration.java:246)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingHelper.mapApplicationSchema(MappingHelper.groovy:36)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriter.getMappedSchema(MappingWriter.java:296)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriter.saveDDL(MappingWriter.java:278)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriter$saveDDL$0.call(Unknown Source)
    at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriterTest$_testSuccessSaveDDL_closure2.doCall(MappingWriterTest.groovy:71)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:568)
    at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
    at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
    at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
    at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
    at groovy.lang.Closure.call(Closure.java:405)
    at groovy.lang.Closure.call(Closure.java:421)
    at org.codehaus.groovy.runtime.IOGroovyMethods.withStream(IOGroovyMethods.java:1297)
    at org.codehaus.groovy.runtime.ResourceGroovyMethods.withOutputStream(ResourceGroovyMethods.java:1838)
    at org.codehaus.groovy.runtime.dgm$1082.invoke(Unknown Source)
    at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
    at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
    at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
    at eu.esdihumboldt.hale.io.deegree.mapping.MappingWriterTest.testSuccessSaveDDL(MappingWriterTest.groovy:71)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:568)
    at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
    at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
    at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
    at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
    at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
    at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
    at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
    at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
    at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
    at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
    at org.junit.runners.Suite.runChild(Suite.java:128)
    at org.junit.runners.Suite.runChild(Suite.java:27)
    at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
    at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
    at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:137)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:115)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:105)
    at de.fhg.igd.equinox.test.app.runner.TestExecutor.executeTests(TestExecutor.java:104)
    at de.fhg.igd.equinox.test.app.runner.TestRunner.runTests(TestRunner.java:115)
    at de.fhg.igd.equinox.test.app.runner.TestRunner.execute(TestRunner.java:90)
    at de.fhg.igd.equinox.test.app.TestRunnerApplication.run(TestRunnerApplication.java:80)
    at de.fhg.igd.equinox.test.app.TestRunnerApplication.run(TestRunnerApplication.java:1)
    at de.fhg.igd.equinox.test.app.internal.AbstractApplication.run(AbstractApplication.java:55)
    at de.fhg.igd.equinox.test.app.internal.AbstractApplication.start(AbstractApplication.java:37)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
    at org.eclipse.equinox.internal.app.AnyThreadAppLauncher.run(AnyThreadAppLauncher.java:30)
    at java.base/java.lang.Thread.run(Thread.java:833)
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