Hi,
I have some problem when i run "perl ensembl-tools-release-76/scripts/variant_effect_predictor/INSTALL.pl -c speedseq/annotations/vep_cache -a ac -s homo_sapiens -y GRCh37" , there is the problem:
Using HTTP::Tiny - this may fail when downloading large files; install LWP::Simple to avoid this issue
Hello! This installer is configured to install v76 of the Ensembl API for use by the VEP.
It will not affect any existing installations of the Ensembl API that you may have.
It will also download and install cache files from Ensembl's FTP server.
Checking for installed versions of the Ensembl API...done
Setting up directories
Downloading required files
fetching ensembl
Trying to fetch using curl
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 124 0 124 0 0 53 0 --:--:-- 0:00:02 --:--:-- 53
100 10.7M 0 10.7M 0 0 676k 0 --:--:-- 0:00:16 --:--:-- 1882k
unpacking ./Bio/tmp/ensembl.zip
moving files
fetching ensembl-variation
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 134 0 134 0 0 45 0 --:--:-- 0:00:02 --:--:-- 45
100 3815k 0 3815k 0 0 431k 0 --:--:-- 0:00:08 --:--:-- 934k
unpacking ./Bio/tmp/ensembl-variation.zip
moving files
fetching ensembl-funcgen
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 132 0 132 0 0 117 0 --:--:-- 0:00:01 --:--:-- 117
100 2011k 0 2011k 0 0 308k 0 --:--:-- 0:00:06 --:--:-- 458k
unpacking ./Bio/tmp/ensembl-funcgen.zip
moving files
fetching BioPerl
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 9340 100 9340 0 0 15985 0 --:--:-- --:--:-- --:--:-- 15993
unpacking ./Bio/tmp/BioPerl-1.6.1.tar.gz
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Invalid header block at offset unknown at /usr/share/perl5/Archive/Extract.pm line 890.
Unable to extract '/bin/Bio/tmp/BioPerl-1.6.1.tar.gz': Invalid header block at offset unknown at ensembl-tools-release-76/scripts/variant_effect_predictor/INSTALL.pl line 904.
Error listing contents of archive '/bin/Bio/tmp/BioPerl-1.6.1.tar.gz': /bin/tar: This does not look like a tar archive
/bin/tar: Skipping to next header
/bin/tar: Exiting with failure status due to previous errors
at ensembl-tools-release-76/scripts/variant_effect_predictor/INSTALL.pl line 904.
Extract failed due to errors at ensembl-tools-release-76/scripts/variant_effect_predictor/INSTALL.pl line 904.
Can't call method "error" on an undefined value at ensembl-tools-release-76/scripts/variant_effect_predictor/INSTALL.pl line 904.
How can i solve the problem?
Hi, I have some problem when i run "perl ensembl-tools-release-76/scripts/variant_effect_predictor/INSTALL.pl -c speedseq/annotations/vep_cache -a ac -s homo_sapiens -y GRCh37" , there is the problem: Using HTTP::Tiny - this may fail when downloading large files; install LWP::Simple to avoid this issue
Hello! This installer is configured to install v76 of the Ensembl API for use by the VEP. It will not affect any existing installations of the Ensembl API that you may have.
It will also download and install cache files from Ensembl's FTP server.
Checking for installed versions of the Ensembl API...done
Setting up directories
Downloading required files