Speedseq SV failure: reference not found

hall-lab / speedseq

A flexible framework for rapid genome analysis and interpretation

MIT License

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Speedseq SV failure: reference not found #133

Open Ravillee opened 5 years ago

Ravillee commented 5 years ago

Hi, I met a problem while running speedseq sv. it shows that: Error: reference fasta file not found, but it did not have any mistakes during speedseq alignment with the same reference fasta file. The reference fasta file is human_g1k_v37.fasta and it has already been indexed by bwa.

wisekh6 commented 4 years ago

Hi, I also have a same issue. any suggestion?