hall-lab / speedseq

A flexible framework for rapid genome analysis and interpretation
MIT License
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one issues about speedseq sv #134

Closed zhangtongda closed 5 years ago

zhangtongda commented 5 years ago

chr10 129240162 10928 N 3.56 . SVTYPE=DUP;SVLEN=115;END=129240277;STRANDS=-+:5;CIPOS=-9,6;CIEND=-8,8;CIPOS95=0,0;CIEND95=0,0;SU=5;PE=1;SR=4 GT:SU:PE:SR:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:5:1:4:38:0.00:-3,-6,-13:65:59:5:58:4:42:3:0:16:1:0.065 0/1:0:0:0:3:3.56:-3,-2,-5:30:26:3:26:3:0:0:0:26:3:0.1

sample1 is GT=0/0, su=5 sample2 is GT=0/1, SU=0