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hall-lab / speedseq

A flexible framework for rapid genome analysis and interpretation
MIT License
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Warning: --split_bam (-S) is deprecated #139

Open Jia21 opened 4 years ago

Jia21 commented 4 years ago

Dear authors,

When I try to use the speedseq sv for CNV calling, I met the warning information like

Warning: --split_bam (-S) is deprecated

I am wondering whether it's a big issue for CNV calling and the reasons to cause this warning.

Thanks! Elaine.