hall-lab / speedseq

A flexible framework for rapid genome analysis and interpretation
MIT License
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make :can not find -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore #153

Open klelizi opened 1 year ago

klelizi commented 1 year ago

make[2]: Entering directory '/root/speed/speedseq/src/CNVnator' Compiling with parallel (OpenMP) support g++ -O3 -std=c++11 -DCNVNATOR_VERSION=\"v0.3.3\" -fopenmp -o cnvnator obj/cnvnator.o obj/EXOnator.o obj/HisMak.o obj/AliParser.o obj/Genotyper.o obj/Interval.o obj/Genome.o samtools/libbam.a samtools/htslib-1.3.1/libhts.-lz -L/usr/local/root/lib -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore /usr/bin/ld: skipping incompatible /usr/local/root/lib/libCore.so when searching for -lCore /usr/bin/ld: cannot find -lCore /usr/bin/ld: skipping incompatible /usr/local/root/lib/libRIO.so when searching for -lRIO /usr/bin/ld: cannot find -lRIO /usr/bin/ld: skipping incompatible /usr/local/root/lib/libHist.so when searching for -lHist /usr/bin/ld: cannot find -lHist /usr/bin/ld: skipping incompatible /usr/local/root/lib/libGraf.so when searching for -lGraf /usr/bin/ld: cannot find -lGraf /usr/bin/ld: skipping incompatible /usr/local/root/lib/libGpad.so when searching for -lGpad /usr/bin/ld: cannot find -lGpad /usr/bin/ld: skipping incompatible /usr/local/root/lib/libTree.so when searching for -lTree /usr/bin/ld: cannot find -lTree /usr/bin/ld: skipping incompatible /usr/local/root/lib/libMathCore.so when searching for -lMathCore /usr/bin/ld: cannot find -lMathCore collect2: error: ld returned 1 exit status make[2]: [Makefile:59: cnvnator] Error 1 make[2]: Leaving directory '/root/speed/speedseq/src/CNVnator' make[1]: [Makefile:139: cnvnator] Error 2 make[1]: Leaving directory '/root/speed/speedseq' make: *** [Makefile:31: all] Error 2 [root@host-10-208-28-170 speedseq]#

What should i do to solve it?Thanks very much.