prune's RETAINED criteria

hall-lab / svtools

Tools for processing and analyzing structural variants.

MIT License

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prune's RETAINED criteria #295

Open pmonnahan opened 4 years ago

pmonnahan commented 4 years ago

In the prune subroutine, how is the best (RETAINED) variant of a cluster determined?

I looked through the paper and tutorial and was unable to find the info. I also checked the source code, but was unable to easily determine how prune is making its decisions on what to output.