How to understand the output genotyped from svtyper?

hall-lab / svtyper

Bayesian genotyper for structural variants

MIT License

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How to understand the output genotyped from svtyper? #108

Open xujinshengjsxu opened 4 years ago

xujinshengjsxu commented 4 years ago

I'm curious about the output from merge multiple samples using svtyper and lmerge. It seems like different from SNP vcf from GATK. How can I understand the REF (N), ALT (\<DEL>) and genotype such as 0/0, 0/1. The situations are as follows. Thanks a lot.