I tried to install the tool using pip install git+https://github.com/hall-lab/svtyper.git and it seems to error out because of the numpy version is not compatible with the python version required 2.7.x. My python version is Python 2.7.12 and I already have a numpy installed 1.14.5 but when I run the pip command
Hello,
I tried to install the tool using pip install git+https://github.com/hall-lab/svtyper.git and it seems to error out because of the numpy version is not compatible with the python version required 2.7.x. My python version is Python 2.7.12 and I already have a numpy installed 1.14.5 but when I run the pip command
pip install git+https://github.com/hall-lab/svtyper.git Collecting git+https://github.com/hall-lab/svtyper.git Cloning https://github.com/hall-lab/svtyper.git to /tmp/pip-ncSBlp-build Collecting pysam>=0.15.0 (from svtyper===0.7.1) Using cached https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz Collecting numpy (from svtyper===0.7.1) Using cached https://files.pythonhosted.org/packages/ac/36/325b27ef698684c38b1fe2e546e2e7ef9cecd7037bcdb35c87efec4356af/numpy-1.17.2.zip Complete output from command python setup.py egg_info: Traceback (most recent call last): File "", line 1, in
File "/tmp/pip-build-DOKuSb/numpy/setup.py", line 31, in
raise RuntimeError("Python version >= 3.5 required.")
RuntimeError: Python version >= 3.5 required.
Please let me know if I'm missing anything.
Thanks!