output AD for depth - Githubissues

hall-lab / svtyper

Bayesian genotyper for structural variants

MIT License

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output AD for depth #84

Open brentp opened 6 years ago

brentp commented 6 years ago

svtyper uses AO and RO, but the spec has now settled on AD for ref, alt depths. this would simplify getting alt depths from a VCF without caring if it's GATK or SV output.