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hall-lab
/
svtyper
Bayesian genotyper for structural variants
MIT License
125
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try caching
#28
ernfrid
closed
8 years ago
0
reads dropped in non deletion events
#27
cc2qe
closed
7 years ago
1
ignore header lines
#26
cc2qe
closed
8 years ago
0
add GT description to header
#25
cc2qe
closed
8 years ago
1
Dropping reference support in certain cases
#24
mlinderm
opened
8 years ago
2
Something funny about reading header
#23
ryanlayer
closed
8 years ago
1
GQ should be Type=Integer
#22
brentp
closed
8 years ago
0
Stopped SVtyper
#21
ghost
closed
8 years ago
4
small optimizations for ~20% speed improvement
#20
brentp
closed
8 years ago
1
Sort oder of input vcf for SVtyper
#19
djakubosky
closed
8 years ago
1
Genotyping Output Size Doesn't Match Input Size
#18
djakubosky
closed
8 years ago
2
VCF header preservation
#17
cc2qe
closed
7 years ago
1
Downsample high depth regions
#16
cc2qe
closed
7 years ago
1
Support MC flag as used by biobambam
#15
chapmanb
closed
9 years ago
4
svtyper on lumpy vcf
#14
lurens
closed
9 years ago
1
region option
#13
zeeev
closed
9 years ago
3
AttributeError: 'csamtools.AlignedRead' object has no attribute 'tlen'
#12
crazyhottommy
closed
9 years ago
10
SVtyper with long reads
#11
timp0
opened
9 years ago
7
Interpreting Genotype Likelihoods of Complex Structural Variants
#10
wb223495
closed
9 years ago
9
also check to see if the read is a supplementary alignment. I had to…
#9
ryanlayer
closed
8 years ago
1
IndexError: list index out of range
#8
ck999
closed
8 years ago
13
ValueError: mate not found
#7
MinocheAE
closed
8 years ago
11
stricter joining of vcfs
#6
cc2qe
closed
9 years ago
0
Numerical result out of range error
#5
twieland
closed
7 years ago
3
Missing 'STR' field
#4
lancour
closed
9 years ago
2
ignore proper pair flag when defining distribution
#3
cc2qe
closed
9 years ago
2
Use empirical distribution histogram
#2
cc2qe
closed
9 years ago
1
Priors for split vs paired discordant ratios
#1
cc2qe
opened
9 years ago
0
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