This might be just an aesthetic thing but the completion bar has some funky behaviour, it might be better just to go back to fractions with a percentage in brackets.
6. Blasting ORFs against reference database - metacyc-v4-2011-07-03 ....
Server bugaboo.westgrid.ca is working
Successfully copied daemon script
'MetaPathways'
found
'MetaPathways/databases'
found
'MetaPathways/executables'
found
MetaPathways/executables/blastp
found
MetaPathways/executables/formatdb
found
MetaPathways/databases/metacyc-v4-2011-07-03
found
already formatted
Sample folder TP62008_30ft_454
NOT found
created!
MetaPathways/TP62008_30ft_454/.qstatdir
NOT found
created!
MetaPathways/TP62008_30ft_454/TP62008_30ft_454.qced.faa
NOT found
copied
Number of sequence files created :2432
[ ------------------ ]
Issuing Command : {'run_type': 'overlay', 'dbnames': ['kegg'], 'sample_name': 'output//TP62008_30ft_454', 'max_parallel_jobs': '400', 'server': 'bugaboo.westgrid.ca', 'database_files': ['kegg-pep-2011-06-18'], 'batch_size': '200', 'user': 'nielsh'}
kegg-pep-2011-06-18 ....
Server bugaboo.westgrid.ca is working
Successfully copied daemon script
'MetaPathways'
found
'MetaPathways/databases'
found
'MetaPathways/executables'
found
MetaPathways/executables/blastp
found
MetaPathways/executables/formatdb
found
MetaPathways/databases/kegg-pep-2011-06-18
found
already formatted
Sample folder TP62008_30ft_454
found
MetaPathways/TP62008_30ft_454/.qstatdir
found
MetaPathways/TP62008_30ft_454/TP62008_30ft_454.qced.faa
found
Number of sequence files created :4864
[ ------------------- ]
Issuing Command : {'run_type': 'overlay', 'dbnames': ['cog'], 'sample_name': 'output//TP62008_30ft_454', 'max_parallel_jobs': '400', 'server': 'bugaboo.westgrid.ca', 'database_files': ['cog-2007-10-30'], 'batch_size': '200', 'user': 'nielsh'}
cog-2007-10-30 ....
Server bugaboo.westgrid.ca is working
Successfully copied daemon script
'MetaPathways'
found
'MetaPathways/databases'
found
'MetaPathways/executables'
found
MetaPathways/executables/blastp
found
MetaPathways/executables/formatdb
found
MetaPathways/databases/cog-2007-10-30
found
already formatted
Sample folder TP62008_30ft_454
found
MetaPathways/TP62008_30ft_454/.qstatdir
found
MetaPathways/TP62008_30ft_454/TP62008_30ft_454.qced.faa
found
Number of sequence files created :7296
[ --------------- ]
Issuing Command : {'run_type': 'overlay', 'dbnames': ['refseq'], 'sample_name': 'output//TP62008_30ft_454', 'max_parallel_jobs': '400', 'server': 'bugaboo.westgrid.ca', 'database_files': ['refseq_protein-2009-04-27'], 'batch_size': '200', 'user': 'nielsh'}
refseq_protein-2009-04-27 ....
Server bugaboo.westgrid.ca is working
Successfully copied daemon script
'MetaPathways'
found
'MetaPathways/databases'
found
'MetaPathways/executables'
found
MetaPathways/executables/blastp
found
MetaPathways/executables/formatdb
found
MetaPathways/databases/refseq_protein-2009-04-27
found
already formatted
Sample folder TP62008_30ft_454
found
MetaPathways/TP62008_30ft_454/.qstatdir
found
MetaPathways/TP62008_30ft_454/TP62008_30ft_454.qced.faa
found
Number of sequence files created :9728
[ ----------- ]
This might be just an aesthetic thing but the completion bar has some funky behaviour, it might be better just to go back to fractions with a percentage in brackets.