Closed nielshanson closed 11 years ago
When running long sequences sometimes the pipeline gives the following error:
shawwal:MetaPathways_1_0 kmewis$ /Users/kmewis/Desktop/MetaPathways_1_0/libs/python_scripts/MetaPathways_filter_input.py --min_length 180 --log_file /Users/kmewis/Documents/BeaverData//Beaver_Metagenome454Reads/run_statistics//Beaver_Metagenome454Reads.nuc.stats -i /Users/kmewis/Documents/BeaverData/GQ_12April2013/Beaver_Metagenome454Reads.fasta -o /Users/kmewis/Documents/BeaverData//Beaver_Metagenome454Reads/preprocessed//Beaver_Metagenome454Reads.fasta -M /Users/kmewis/Documents/BeaverData//Beaver_Metagenome454Reads/preprocessed//Beaver_Metagenome454Reads.mapping.txt Traceback (most recent call last): File "/Users/kmewis/Desktop/MetaPathways_1_0/libs/python_scripts/MetaPathways_filter_input.py", line 261, in <module> main(sys.argv[1:]) File "/Users/kmewis/Desktop/MetaPathways_1_0/libs/python_scripts/MetaPathways_filter_input.py", line 181, in main length_distribution[index] += 1 KeyError: 35
When running long sequences sometimes the pipeline gives the following error: