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hallamlab / MetaPathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
http://hallam.microbiology.ubc.ca/MetaPathways
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Pathway Tools directories may have to be added to a user's $PATH variable as part of setup #3

Closed hallamlab closed 7 years ago

hallamlab commented 11 years ago

Pathway Tools installation directories may have to be added to the $PATH variable of the system in order to run properly. I think this has something to do with the Cell Overview when Pathway Tools is running in "web mode". These directories are: i.e.

/Users/username/pathway-tools/
/Users/username/pathway-tools/aic-export/pathway-tools/ptools/16.0/

It would be useful to see which one is required or which one makes a difference.

hallamlab commented 7 years ago

Please use the newest version of MP on GitHub