Summarize KEGG and CO distributions from a given .gff or .gbk file with annotations

hallamlab / MetaPathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information

http://hallam.microbiology.ubc.ca/MetaPathways

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Summarize KEGG and CO distributions from a given .gff or .gbk file with annotations #6

Closed hallamlab closed 11 years ago

hallamlab commented 11 years ago

Currently annotations from .gff or .gbk files as input are not parced and summarized for CO or KEGG numbers. This could be an added feature.

Ether the user would (1) want to re-annotate using protein BLAST against the KEGG and COG or (2) use the existing annotations contained within the .gff or .gbk files, or (3) both. So we have to make sure the differences between these two outputs is clear.