hallamlab / MetaPathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
http://hallam.microbiology.ubc.ca/MetaPathways
12 stars 7 forks source link

MLTreeMap not creating images in mltreemap/tables_and_figures/ #8

Closed hallamlab closed 11 years ago

hallamlab commented 11 years ago

It seem that MLTreeMap completes its calculations but does not continue to create the images because it thinks its already done (probably because files/folders are there but they are empty). i.e. in the output

Issuing Command : mltreemap/mltreemap_calculation/mltreemap.pl -i input/NapDC//NapDC_454.fasta -o output/NapDC//NapDC_454/mltreemap_calculations/

16. MLTreeMap Calculations  ..... Success!

Issuing Command : mltreemap/mltreemap_imagemaker/mltreemap_imagemaker.pl -i output/NapDC//NapDC_454/mltreemap_calculations//final_outputs/ -o output/NapDC//NapDC_454/results//mltreemap//tables_and_figures/ -m a

17. Making MLTreeMap Images  ..... Already Computed!

However the mltreemap/tables_and_figures/ folder is empty so this last step is not being done.

This should be fixed up for version 1.0