Multifunctional enzymes with more than one EC number not parsed correctly

hallamlab / metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

http://hallam.microbiology.ubc.ca/MetaPathways/

33 stars 14 forks source link

Multifunctional enzymes with more than one EC number not parsed correctly #38

Closed taltman closed 7 years ago

taltman commented 9 years ago

Here's an entry from a MetaPathways-constructed PF file:

ID scaffolds_208_0 NAME scaffolds_208_0 STARTBASE 48900 ENDBASE 49205 PRODUCT dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) / reductase 1.1.1.133) PRODUCT-TYPE P EC 5.1.3.13 //

Notice that even though the enzyme description includes two different EC numbers, only one makes it into its own EC line.

taltman commented 9 years ago

I should mention that I believe that the PathoLogic name -matcher will catch that second EC number, but I'm not sure. Something to check.

hallamlab commented 7 years ago

the pf file will be modified in future MP versions!