search

hallamlab / metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
http://hallam.microbiology.ubc.ca/MetaPathways/
33 stars 14 forks source link

MP2 doesn't recognize large formatted DBs due to chunk files #85

Closed taltman closed 7 years ago

taltman commented 8 years ago

MP2 keeps on trying to re-build already built DBs. I fixed the issue with the temp string, but it still persists in thinking that there are missing files.

I traced the error to the 'isDBformatted' in diagnoze.py [sic]. It should have the string '.' before the '\d.' string in the regular expression checking for files. Now the code recognizes that the RefSeq and SEED formatted databases are present.

hallamlab commented 7 years ago

A new version addressing this issue will be available soon