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hallamlab / metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
http://hallam.microbiology.ubc.ca/MetaPathways/
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MP doesn't create incrementing locus ID for contig trna genes #87

Closed taltman closed 7 years ago

taltman commented 8 years ago

Here is a selection of MetaPathways-created locus IDs for scaffold number 84:

scaffolds_84_0 scaffolds_84_4 scaffolds_84_5 scaffolds_84_tRNA

So, genes get sensible incrementing locus IDs, but the tRNA gene just gets the string 'trna'. What happens if there are two tRNA genes on one contig? Will the latest one overwrite the previous one?

These tRNA locus IDs need to be incremented, too.

hallamlab commented 7 years ago

A new version of MP will be available shortly and address this issue