Install problem - Githubissues

Hi, I've a problem on the RxODE installation. (Windows 7 and R 3.3.2 version are used.) I don't know why "Command not found" is appeared. Hence, "mod1 <- RxODE(model = ode, modName = "mod1")" can't be properly work after library(RxODE). Can you help me? Thank you so much.

Here is the message:

install_github("hallowkm/RxODE/RxODE") Downloading GitHub repo hallowkm/RxODE@master from URL https://api.github.com/repos/hallowkm/RxODE/zipball/master Installing RxODE "C:/PROGRA~1/R/R-33~1.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD \ INSTALL \ "C:/Users/kaiyunn/AppData/Local/Temp/RtmpQvtB5Q/devtools21843eecc74/hallowkm-RxODE-746e050/RxODE" \ --library="C:/Users/kaiyunn/Documents/R/win-library/3.3" --install-tests

installing source package 'RxODE' ... libs running 'src/Makefile.win' ... echo "make libodeaux.a in ode/ ..." make libodeaux.a in ode/ ... (cd ode; /usr/bin/make CC="c:/Rtools/mingw_64/bin/gcc " FC="c:/Rtools/mingw_64/bin/gfortran " CFLAGS="-O2 -Wall -std=gnu99 -mtune=core2" FFLAGS="-O2 -mtune=core2" AR="c:/Rtools/mingw_64/bin/ar" RANLIB="c:/Rtools/mingw_64/bin/ranlib" libodeaux.a) c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o opkda2.o opkda2.f c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o dlsoda.o dlsoda.f c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o opkda1_abbr.o opkda1_abbr.f c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o vode.o vode.f c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o dop853.o dop853.c c:/Rtools/mingw_64/bin/ar cruv libodeaux.a opkda2.o dlsoda.o opkda1_abbr.o vode.o dop853.o a - opkda2.o a - dlsoda.o a - opkda1_abbr.o a - vode.o a - dop853.o c:/Rtools/mingw_64/bin/ranlib libodeaux.a echo "make libodeaux.a ..." make libodeaux.a ... (cd dparser; /usr/bin/make -f Makefile.new CC="c:/Rtools/mingw_64/bin/gcc " CFLAGS="-O2 -Wall -std=gnu99 -mtune=core2" AR="c:/Rtools/mingw_64/bin/ar" RANLIB="c:/Rtools/mingw_64/bin/ranlib" libdparse.a) make[1]: uname: Command not found make[1]: uname: Command not found make[1]: uname: Command not found make[1]: uname: Command not found make[1]: uname: Command not found uname: not found awk: not found git: not found make[1]: uname: Command not found uname: not found awk: not found c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o arg.o arg.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o parse.o parse.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o scan.o scan.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o symtab.o symtab.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o util.o util.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o dparse_tree.o dparse_tree.c c:/Rtools/mingw_64/bin/ar cruv libdparse.a arg.o parse.o scan.o symtab.o util.o dparse_tree.o a - arg.o a - parse.o a - scan.o a - symtab.o a - util.o a - dparse_tree.o c:/Rtools/mingw_64/bin/ranlib libdparse.a echo "make tran ..." make tran ... (c:/Rtools/mingw_64/bin/gcc tran.c -Idparser -Ldparser -ldparse -o tran.exe) installing via 'install.libs.R' to C:/Users/kaiyunn/Documents/R/win-library/3.3/RxODE Installing ./tran.exe to C:/Users/kaiyunn/Documents/R/win-library/3.3/RxODE/bin/x64 Installing ode/libodeaux.a to C:/Users/kaiyunn/Documents/R/win-library/3.3/RxODE/libs/x64 Installing ode/dop853.h to C:/Users/kaiyunn/Documents/R/win-library/3.3/RxODE/include R demo inst tests preparing package for lazy loading help installing help indices building package indices installing vignettes ** testing if installed package can be loaded
DONE (RxODE) Reloading installed RxODE

could you elaborate your statement: "mod1 <- RxODE(model = ode, modName = "mod1")" can't be properly work after library(RxODE).

On Tue, Dec 20, 2016 at 8:41 PM, gracertliu notifications@github.com wrote:

Hi, I've a problem on the RxODE installation. (Windows 7 and R 3.3.2 version are used.) I don't know why "Command not found" is appeared. Hence, "mod1 <- RxODE(model = ode, modName = "mod1")" can't be properly work after library(RxODE). Can you help me? Thank you so much.

Here is the message:

install_github("hallowkm/RxODE/RxODE") Downloading GitHub repo hallowkm/RxODE@master from URL https://api.github.com/repos/hallowkm/RxODE/zipball/master Installing RxODE "C:/PROGRA1/R/R-331.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL "C:/Users/kaiyunn/AppData/Local/Temp/RtmpQvtB5Q/ devtools21843eecc74/hallowkm-RxODE-746e050/RxODE" --library="C:/Users/kaiyunn/Documents/R/win-library/3.3" --install-tests

installing source package 'RxODE' ... libs running 'src/Makefile.win' ... echo "make libodeaux.a in ode/ ..." make libodeaux.a in ode/ ... (cd ode; /usr/bin/make CC="c:/Rtools/mingw_64/bin/gcc " FC="c:/Rtools/mingw_64/bin/gfortran " CFLAGS="-O2 -Wall -std=gnu99 -mtune=core2" FFLAGS="-O2 -mtune=core2" AR="c:/Rtools/mingw_64/bin/ar" RANLIB="c:/Rtools/mingw_64/bin/ranlib" libodeaux.a) c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o opkda2.o opkda2.f c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o dlsoda.o dlsoda.f c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o opkda1_abbr.o opkda1_abbr.f c:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c -o vode.o vode.f c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o dop853.o dop853.c c:/Rtools/mingw_64/bin/ar cruv libodeaux.a opkda2.o dlsoda.o opkda1_abbr.o vode.o dop853.o a - opkda2.o a - dlsoda.o a - opkda1_abbr.o a - vode.o a - dop853.o c:/Rtools/mingw_64/bin/ranlib libodeaux.a echo "make libodeaux.a ..." make libodeaux.a ... (cd dparser; /usr/bin/make -f Makefile.new CC="c:/Rtools/mingw_64/bin/gcc " CFLAGS="-O2 -Wall -std=gnu99 -mtune=core2" AR="c:/Rtools/mingw_64/bin/ar" RANLIB="c:/Rtools/mingw_64/bin/ranlib" libdparse.a) make[1]: uname: Command not found make[1]: uname: Command not found make[1]: uname: Command not found make[1]: uname: Command not found make[1]: uname: Command not found uname: not found awk: not found git: not found make[1]: uname: Command not found uname: not found awk: not found c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o arg.o arg.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o parse.o parse.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o scan.o scan.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o symtab.o symtab.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o util.o util.c c:/Rtools/mingw_64/bin/gcc -O2 -Wall -std=gnu99 -mtune=core2 -c -o dparse_tree.o dparse_tree.c c:/Rtools/mingw_64/bin/ar cruv libdparse.a arg.o parse.o scan.o symtab.o util.o dparse_tree.o a - arg.o a - parse.o a - scan.o a - symtab.o a - util.o a - dparse_tree.o c:/Rtools/mingw_64/bin/ranlib libdparse.a echo "make tran ..." make tran ... (c:/Rtools/mingw_64/bin/gcc tran.c -Idparser -Ldparser -ldparse -o tran.exe) installing via 'install.libs.R' to C:/Users/kaiyunn/Documents/R/ win-library/3.3/RxODE Installing ./tran.exe to C:/Users/kaiyunn/Documents/R/ win-library/3.3/RxODE/bin/x64 Installing ode/libodeaux.a to C:/Users/kaiyunn/Documents/R/ win-library/3.3/RxODE/libs/x64 Installing ode/dop853.h to C:/Users/kaiyunn/Documents/R/ win-library/3.3/RxODE/include R demo inst tests preparing package for lazy loading help installing help indices building package indices installing vignettes ** testing if installed package can be loaded

DONE (RxODE) Reloading installed RxODE

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hallowkm / RxODE

Install problem #8