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hallucigenia-sparsa / seqtime

The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics
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plot(ricker.out) example fails #10

Closed antagomir closed 7 years ago

antagomir commented 7 years ago

** Examples

N <- 10 ricker.out <- ricker(N,generateA(N),K=rep(0.01,N)) [1] "Adjusting connectance to 0.02" [1] "Initial edge number 100" [1] "Initial connectance 1" [1] "Number of edges removed 89" [1] "Final connectance 0.0111111111111111" [1] "Final connectance: 0.0111111111111111" noisetypes <- identifyNoisetypes(ricker.out) [1] "Number of taxa below the abundance threshold: 9" [1] "Number of taxa with non-significant power spectrum laws: 0" [1] "Number of taxa with non-classified power spectrum: 1" [1] "Number of taxa with white noise: 0" [1] "Number of taxa with pink noise: 0" [1] "Number of taxa with brown noise: 0" [1] "Number of taxa with black noise: 0" plot(ricker.out[noisetypes$brown[1],],

  • main = paste("Simulated OTU",noisetypes$brown[1]),
  • ylab = "Abundance") Warning in min(x) : no non-missing arguments to min; returning Inf Warning in max(x) : no non-missing arguments to max; returning -Inf Warning in min(x) : no non-missing arguments to min; returning Inf Warning in max(x) : no non-missing arguments to max; returning -Inf Error in plot.window(...) : need finite 'xlim' values Calls: plot -> plot.default -> localWindow -> plot.window Execution halted
hallucigenia-sparsa commented 7 years ago

Fixed.