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hallucigenia-sparsa / seqtime

The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics
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Vignette #3

Closed antagomir closed 7 years ago

antagomir commented 8 years ago

would be useful - for the main functions at least.

antagomir commented 7 years ago

I now expanded an existing tutorial that introduces different community models and their time series properties: https://github.com/hallucigenia-sparsa/seqtime/blob/master/inst/examples/seqtime_tour.Rmd

you can enhance the display of this tutorial online (github does not generate the figures), or simply link the github tutorial page in the github README.

If I find the time, I'll add another one on network inference with LIMITS.

antagomir commented 7 years ago

Good. I moved the Rmd files in vignette/ folder as this is nowadays more standard.

Github does not generate the figures but it is easy to do when the package is updated, by just running vignettes/main.R which runs the required knit commands. This generates the md files and figures which show nicely in github site.

It is also possible to fully automate the vignettes updates via Travis. I have done that for other packages. So the vignette would be updated and pushed to the package website every time when master branch is updated.

antagomir commented 7 years ago

Ok all done.