hammer / ot-ev

Working with Open Targets evidence data 🧐
Apache License 2.0
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Import fix_evidence too #1

Open hammer opened 5 years ago

hammer commented 5 years ago

https://github.com/opentargets/data_pipeline/blob/master/mrtarget/common/EvidenceString.py#L153

Going to be harder because it relies on targets, diseases, and eco.

hammer commented 5 years ago

Did eco_scores, still need to do:

hammer commented 5 years ago

Turns out get_ontology_code_from_url is easy to import from https://github.com/opentargets/data_pipeline/blob/master/mrtarget/modules/EFO.py#L21, which makes fix_disease_id easy to import too.

hammer commented 5 years ago
hammer commented 5 years ago

Where does https://github.com/opentargets/data_pipeline/blob/master/mrtarget/resources/genes_with_non_reference_ensembl_ids.tsv come from?! Called in https://github.com/opentargets/data_pipeline/blob/master/mrtarget/common/LookupHelpers.py.