Optitype fails with cryptic errors

hammerlab / biokepi

Bioinformatics Ketrew Pipelines

Apache License 2.0

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Optitype fails with cryptic errors #260

Open ihodes opened 8 years ago

ihodes commented 8 years ago

0:00:00.56 Mapping dry_run_1_XT-NORMAL-R1-cat.fastq to GEN reference...
('  Signal handler called from ', 'subprocess.py', '_eintr_retry_call', 476)
('  Waiting...',)
('  Signal', 15, 'recieved, but no process queued')
  Exiting now

Investigating…

ihodes commented 8 years ago

I continue to have problems installing it, too (even once it's been installed, the install node appears to fail, now with "# fatal: Unable to find remote helper for 'https'").