hammerlab / biokepi

Bioinformatics Ketrew Pipelines
Apache License 2.0
27 stars 4 forks source link

samtools: [finish_merged_header] Output header text too long #459

Closed ihodes closed 7 years ago

ihodes commented 7 years ago

Getting hundreds of thousands of header line duplicates when sorting or merging with samtools:

https://github.com/samtools/samtools/commit/8471a0d77be2a39276992b59d139ce7a4c8d3951

Fixed in 1.4, so upgrading samtools should fix