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hammerlab / biokepi

Bioinformatics Ketrew Pipelines
Apache License 2.0
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MuTect2 can silently fail and output an empty VCF #471

Open ihodes opened 7 years ago

ihodes commented 7 years ago

We should…validate, somehow, that the product has some bytes in it at least, or is a VCF.

This causes the pipeline later-on to fail (as concatting an empty VCF crashes vcftools concat)