Expressed neoantigens and neoantigens should both use topiary

hammerlab / cohorts

Utilities for analyzing mutations and neoepitopes in patient cohorts

Apache License 2.0

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Open tavinathanson opened 7 years ago

tavinathanson commented 7 years ago

Currently, regular neoantigens use topiary while expressed neoantigens use isovar + mhctools because topiary doesn't use isovar.

This depends on topiary making use of isovar, I think.