search

hammerlab / cohorts

Utilities for analyzing mutations and neoepitopes in patient cohorts
Apache License 2.0
20 stars 4 forks source link

median_vaf_purity() got an unexpected keyword argument 'normalized_per_mb' #212

Closed jburos closed 7 years ago

jburos commented 7 years ago

I see the following error when running:

from cohorts.functions import missense_snv_count, median_vaf_purity
df = cohort.as_dataframe(on = [missense_snv_count, median_vaf_purity], normalized_per_mb=True)

Output:

Error in py_call_impl(callable, dots$args, dots$keywords) :
  TypeError: ("median_vaf_purity() got an unexpected keyword argument 'normalized_per_mb'", 'occurred at index 0')
tavinathanson commented 7 years ago

Oops!