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hammerlab / cycledash

Variant Caller Analysis Dashboard and Data Management System
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Write test of the genotype extractor #641

Closed ihodes closed 9 years ago

ihodes commented 9 years ago

Tests that the extracted genotypes in the database contain the same information as the VCF records read with pyVCF.

This is the foundation for my plan to test a bunch of different VCF types (e.g. from Somatic Sniper, Guac, VarScan, Mutect) to make sure pyVCF and everything work with them as expected. Cf. issue like https://github.com/hammerlab/cycledash/issues/615 and https://github.com/hammerlab/cycledash/issues/559. Filed issue https://github.com/hammerlab/cycledash/issues/642 to track this.

Review on Reviewable

tavinathanson commented 9 years ago

Back to you @ihodes

ihodes commented 9 years ago

Thanks for the review—this wasn't a fun one, I know—back to you!