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hammerlab / cytokit

Microscopy Image Cytometry Toolkit
Apache License 2.0
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Tensorflow not downloading the NN #21

Closed jesusdpa1 closed 4 years ago

jesusdpa1 commented 4 years ago

Hi Eric,

I am trying to run cytokit on a new pc and got the following error:

image

I have notice that the network is not being download when doing a clean start. I am not sure if that could be the problem.

The new PC has the following configuration: Memory 128Gb CPU: Intel Xeon W-2155 GPU: Quadro RTX 5000 12Gb

The image set that I am trying to analyze is 9x7 20 planes 9 cycles

I have try normal configuration and adjusted as suggested in the previous error report, with less number of planes and cycles but I still got the same error,

eric-czech commented 4 years ago

It happens when one of the files downloaded as a part of this initialization end up being incomplete or empty. You can delete them at /lab/data/.cytokit/cache/best_focus/model and run it again. I don't know why the downloads sometimes fail, but that's the code that does it.

jesusdpa1 commented 4 years ago

Thanks Eric, problem solve!

eric-czech commented 4 years ago

Awesome! I'll close this out then.