Bring topiary back and run it by default

hammerlab / epidisco

Personalized cancer epitope discovery and peptide vaccine prediction pipeline

Apache License 2.0

30 stars 7 forks source link

Bring topiary back and run it by default #161

Closed armish closed 7 years ago

armish commented 7 years ago

Depends on https://github.com/hammerlab/biokepi/pull/432. Resolves #158.

ihodes commented 7 years ago

LGTM pending comments on the biokepi PR!

hammer commented 7 years ago

@iskandr are we actively developing topiary? I feel like recent action has been in vaxrank.

cf. https://github.com/hammerlab/cohorts/issues/163 and https://github.com/hammerlab/vaxrank/issues/31

iskandr commented 7 years ago

@hammer Some random folks outside the lab use it and I'm keeping Topiary current with other upstream changes to e.g. mhctools. So it's used but not currently necessary for PGV.