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hammerlab / flowdec

TensorFlow Deconvolution for Microscopy Data
Apache License 2.0
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TypeError: unexpected keyword argument: img_num #22

Closed naureeng closed 5 years ago

naureeng commented 5 years ago

I am using a virtual conda environment with TensorFlow 1.13.1 and I cannot import the C. elegans dataset. This is a picture of the error I get issue

eric-czech commented 5 years ago

As a workaround, you could switch to scikit-image 0.14.0 (i.e. pip install scikit-image==0.14.0).

I'll leave this open though in case someone (probably me) gets a chance to either either pin it as a requirement or figure out a way to make it work with newer scikit-image versions.

naureeng commented 5 years ago

Thanks for the reply! There is a bug between numpy 1.16 and scikit-image 0.14.0/0.14.1 https://github.com/scikit-image/scikit-image/issues/3586

I installed scikit-image 0.14.2 to get it working